Evidence map›Paper›PMID 31641485›Full record

ArticleEcology and evolution2019

Exploring a Pool-seq-only approach for gaining population genomic insights in nonmodel species.

Sara Kurland, Christopher W Wheat, Maria de la Paz Celorio Mancera, Verena E Kutschera, Jason Hill, Anastasia Andersson, Carl-Johan Rubin, Leif Andersson, Nils Ryman, Linda Laikre

Abstract read
In one paragraph

Article in Ecology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Sara KurlandDivision of Population Genetics Department of Zoology Stockholm University Stockholm Sweden.ORCID https://orcid.org/0000-0002-5370-1236
Christopher W WheatDivision of Population Genetics Department of Zoology Stockholm University Stockholm Sweden.
Maria de la Paz Celorio ManceraDivision of Population Genetics Department of Zoology Stockholm University Stockholm Sweden.ORCID https://orcid.org/0000-0003-0296-0577
Verena E KutscheraScience for Life Laboratory and Department for Biochemistry and Biophysics Stockholm University Solna Sweden.ORCID https://orcid.org/0000-0002-8930-534X
Jason HillDivision of Population Genetics Department of Zoology Stockholm University Stockholm Sweden.
Anastasia AnderssonDivision of Population Genetics Department of Zoology Stockholm University Stockholm Sweden.
Carl-Johan RubinDepartment of Medical Biochemistry and Microbiology Uppsala University Uppsala Sweden.
Leif AnderssonDepartment of Medical Biochemistry and Microbiology Uppsala University Uppsala Sweden.ORCID https://orcid.org/0000-0002-4085-6968
Nils RymanDivision of Population Genetics Department of Zoology Stockholm University Stockholm Sweden.ORCID https://orcid.org/0000-0003-3342-8479
Linda LaikreDivision of Population Genetics Department of Zoology Stockholm University Stockholm Sweden.ORCID https://orcid.org/0000-0001-9286-3361

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Developing genomic insights is challenging in nonmodel species for which resources are often scarce and prohibitively costly. Here, we explore the potential of a recently established approach using Pool-seq data to generate a de novo genome assembly for mining exons, upon which Pool-seq data are used to estimate population divergence and diversity. We do this for two pairs of sympatric populations of brown trout (

Indexed as

genetic diversitygenome sequencingpopulation genomicssalmonidSalmo truttasingle nucleotide polymorphism

Identifiers

PMID31641485
PMCPMC6802065

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.