Evidence map›Paper›PMID 31641159›Full record

ArticleScientific reports2019

Mutations in Glucan, Water Dikinase Affect Starch Degradation and Gametophore Development in the Moss Physcomitrella patens.

Ntombizanele T Mdodana, Jonathan F Jewell, Ethel E Phiri, Marthinus L Smith, Kenneth Oberlander, Saire Mahmoodi, Jens Kossmann, James R Lloyd

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Ntombizanele T MdodanaDepartment of Genetics, Institute for Plant Biotechnology, University of Stellenbosch, Stellenbosch, South Africa.
Jonathan F JewellDepartment of Genetics, Institute for Plant Biotechnology, University of Stellenbosch, Stellenbosch, South Africa.
Ethel E PhiriDepartment of Genetics, Institute for Plant Biotechnology, University of Stellenbosch, Stellenbosch, South Africa.ORCID http://orcid.org/0000-0003-1473-2045
Marthinus L SmithDepartment of Genetics, Institute for Plant Biotechnology, University of Stellenbosch, Stellenbosch, South Africa.
Kenneth OberlanderSchweickerdt Herbarium, Department of Plant and Soil Sciences, University of Pretoria, Private Bag X20, Hatfield, 0028, South Africa.
Saire MahmoodiDepartment of Genetics, Institute for Plant Biotechnology, University of Stellenbosch, Stellenbosch, South Africa.
Jens KossmannDepartment of Genetics, Institute for Plant Biotechnology, University of Stellenbosch, Stellenbosch, South Africa.
James R LloydDepartment of Genetics, Institute for Plant Biotechnology, University of Stellenbosch, Stellenbosch, South Africa. lloyd@sun.ac.za.ORCID http://orcid.org/0000-0003-3911-1819
Stellenbosch University · ZAUniversity of Pretoria · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The role of starch degradation in non-vascular plants is poorly understood. To expand our knowledge of this area, we have studied this process in Physcomitrella patens. This has been achieved through examination of the step known to initiate starch degradation in angiosperms, glucan phosphorylation, catalysed by glucan, water dikinase (GWD) enzymes. Phylogenetic analysis indicates that GWD isoforms can be divided into two clades, one of which contains GWD1/GWD2 and the other GWD3 isoforms. These clades split at a very early stage within plant evolution, as distinct sequences that cluster within each were identified in all major plant lineages. Of the five genes we identified within the Physcomitrella genome that encode GWD-like enzymes, two group within the GWD1/GWD2 clade and the others within the GWD3 clade. Proteins encoded by both loci in the GWD1/GWD2 clade, named PpGWDa and PpGWDb, are localised in plastids. Mutations of either PpGWDa or PpGWDb reduce starch phosphate abundance, however, a mutation at the PpGWDa locus had a much greater influence than one at PpGWDb. Only mutations affecting PpGWDa inhibited starch degradation. Mutants lacking this enzyme also failed to develop gametophores, a phenotype that could be chemically complemented using glucose supplementation within the growth medium.

Indexed as

Amino Acid SequenceBryopsidaGenome, PlantGerm Cells, PlantGlucansIsoenzymesMutationPhosphorylationPhosphotransferases (Paired Acceptors)PhylogenyPlastidsSolubilityStarchWaterGlucansIsoenzymesPhosphotransferases (Paired Acceptors)StarchWater

Identifiers

PMID31641159
PMCPMC6805951
OpenAlexW2982270182

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.