ArticleScientific reports2019
Diat.barcode, an open-access curated barcode library for diatoms.
Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.
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Who cites it
36 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Meta-analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment.Molecular ecology · 2022Pooled it
- Impact of the invasive diatom species Cymbella janischii on riverine microbial biofilm communities and a potential role of bacterially produced zeatin.Journal of phycology · 2026Article
- Chloroplast and mitochondrial genomes of Sphaerosorus coelastroides Pascher (Xanthophyceae) from Central Appalachia, Clinch River, Virginia, United States.Journal of phycology · 2026Article
- Craticula vanensis sp. nov., a new species of diatom with a complex mitogenome, inhabiting soda lakes in central Europe and Anatolia.Scientific reports · 2026Article
- A trait database for the characterization of diatom communities in disconnected pools.Scientific data · 2026Article
- Phytoplankton Diversity in the Northern Adriatic Sea: Insights and Inconsistencies from Microscopy and Metabarcoding.Biology · 2026Article
- Soil algae in arable land: changes in the genotypic community composition across time points and farming systems-a pilot study.Frontiers in microbiology · 2026Article
- Stochasticity Shapes Microbial Communities in High-Altitude Lakes, Whereas Species Selection and Homogenization Dispersal Are More Important in Lowland Lakes: Case of Benthic Diatoms in Alpine Lakes.Ecology and evolution · 2025Article
- Article
- Proficiency testing and cross-laboratory method comparison to support standardisation of diatom DNA metabarcoding for freshwater biomonitoring.Metabarcoding and metagenomics · 2025Article
- Sexual reproduction during diatom bloom.ISME communications · 2025Article
- Can genetic diversity in microalgae species be explained by climate: an overview of metabarcoding with diatoms.ISME communications · 2025Article
- The importance of integrating phycological research, teaching, outreach, and engagement in a changing world.Journal of phycology · 2024Article
- BFR2: a curated ribosomal reference dataset for benthic foraminifera.Scientific data · 2024Article
- The Diatom Diversity and Ecological Status of a Tufa-Depositing River through eDNA Metabarcoding vs. a Morphological Approach-A Case Study of the Una River (Bosnia and Herzegovina).Microorganisms · 2024Article
- Using DNA metabarcoding to characterize national scale diatom-environment relationships and to develop indicators in streams and rivers of the United States.The Science of the total environment · 2024Article
- First regional reference database of northern Adriatic diatom transcriptomes.Scientific reports · 2024Article
- A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses.Molecular ecology resources · 2024Review
- Article
- Successive accumulation of biotic assemblages at a fine spatial scale along glacier-fed waters.iScience · 2024Article
Corrections and comments
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Authors and funding
12 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton and which make a major contribution to the productivity of oceans and freshwaters. They display a huge diversity, which makes them excellent ecological indicators of aquatic ecosystems. Usually, diatoms are identified using characteristics of their exoskeleton morphology. DNA-barcoding is an alternative to this and the use of High-Throughput-Sequencing enables the rapid analysis of many environmental samples at a lower cost than analyses under microscope. However, to identify environmental sequences correctly, an expertly curated reference library is needed. Several curated libraries for protists exists; none, however are dedicated to diatoms. Diat.barcode is an open-access library dedicated to diatoms which has been maintained since 2012. Data come from two sources (1) the NCBI nucleotide database and (2) unpublished sequencing data of culture collections. Since 2017, several experts have collaborated to curate this library for rbcL, a chloroplast marker suitable for species-level identification of diatoms. For the latest version of the database (version 7), 605 of the 3482 taxonomical names originally assigned by the authors of the rbcL sequences were modified after curation. The database is accessible at https://www6.inra.fr/carrtel-collection_eng/Barcoding-database .
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