ArticleScientific data2019
Chromosome-level genome assembly of golden pompano (Trachinotus ovatus) in the family Carangidae.
Article in Scientific data, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
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Who cites it
35 citing papers in PubMed, 72 citations in OpenAlex.
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- A chromosome-level reference genome of the surf parrotfish (Scarus rivulatus).Scientific data · 2025Article
- Telomere-to-telomere haplotype-resolved genome assembly of a female oyster pompano (Trachinotus anak).Scientific data · 2025Article
- Haplotype-resolved genomics identifiesiScience · 2025Article
- Genomic Prediction for Growth-Related Traits in Golden Pompano (Evolutionary applications · 2025Article
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- Article
- Functional Characterization of Galectin-8 from Golden Pompano Trachinotus ovatus Reveals Its Broad-Spectrum Antimicrobial Activity.Marine biotechnology (New York, N.Y.) · 2024Article
- The male and female genomes of golden pompano (Trachinotus ovatus) provide insights into the sex chromosome evolution and rapid growth.Journal of advanced research · 2024Article
- Advances in biotechnology and breeding innovations in China's marine aquaculture.Advanced biotechnology · 2024Review
- Whole-Genome Sequencing Analyses Reveal the Evolution Mechanisms of Typical Biological Features ofAnimals : an open access journal from MDPI · 2024Article
- Turnovers of Sex-Determining Mutation in the Golden Pompano and Related Species Provide Insights into Microevolution of Undifferentiated Sex Chromosome.Genome biology and evolution · 2024Article
- Genome-wide characterization, phylogenetic and expression analysis ofFrontiers in immunology · 2024Article
- Functional Characterization of theGenes · 2023Article
- Genome-Wide Identification ofMarine drugs · 2023Article
- Characterization of theGenes · 2023Article
- Chromosome-level genome assembly of largemouth bass (Micropterus salmoides) using PacBio and Hi-C technologies.Scientific data · 2022Article
- Chromosome-level genome assembly and characterization of Sophora Japonica.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022Article
Corrections and comments
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Authors and funding
10 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Golden pompano (Trachinotus ovatus), a marine fish in the Carangidae family, has a wide geographical distribution and adapts to severe environmental rigours. It is also an economically valuable aquaculture fish. To understand the genetic mechanism of adaption to environmental rigours and improve the production in aquaculture, we assembled its genome. By combination of Illumina and Pacbio reads, the obtained genome sequence is 647.5 Mb with the contig N50 of 1.80 Mb and the scaffold N50 of 5.05 Mb. The assembly covers 98.9% of the estimated genome size (655 Mb). Based on Hi-C data, 99.4% of the assembled bases are anchored into 24 pseudo-chromosomes. The annotation includes 21,915 protein-coding genes, in which 95.7% of 2,586 BUSCO vertebrate conserved genes are complete. This genome is expected to contribute to the comparative analysis of the Carangidae family.
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