Evidence map›Paper›PMID 31640596›Full record

ArticleBMC infectious diseases2019

Molecular characterization of hepatitis C virus in liver disease patients in Botswana: a retrospective cross-sectional study.

Lynnette Bhebhe, Motswedi Anderson, Sajini Souda, Wonderful T Choga, Edward Zumbika, Zachary M Shaver, Tshepiso Mbangiwa, Bonolo B Phinius, Chabeni C Banda, Pinkie Melamu and 5 more

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 3 countries.

Lynnette BhebheBotswana Harvard AIDS Institute Partnership, Research Laboratory, Gaborone, Botswana.
Motswedi AndersonBotswana Harvard AIDS Institute Partnership, Research Laboratory, Gaborone, Botswana.
Sajini SoudaDepartment of Pathology, Faculty of Medicine, University of Botswana, Gaborone, Botswana.
Wonderful T ChogaBotswana Harvard AIDS Institute Partnership, Research Laboratory, Gaborone, Botswana.
Edward ZumbikaDepartment of Applied Biology and Biochemistry, National University of Science and Technology, Bulawayo, Zimbabwe.
Zachary M ShaverBotswana Harvard AIDS Institute Partnership, Research Laboratory, Gaborone, Botswana.
Tshepiso MbangiwaBotswana Harvard AIDS Institute Partnership, Research Laboratory, Gaborone, Botswana.
Bonolo B PhiniusBotswana Harvard AIDS Institute Partnership, Research Laboratory, Gaborone, Botswana.
Chabeni C BandaBotswana Harvard AIDS Institute Partnership, Research Laboratory, Gaborone, Botswana.
Pinkie MelamuBotswana Harvard AIDS Institute Partnership, Research Laboratory, Gaborone, Botswana.
Rosemary M MusondaBotswana Harvard AIDS Institute Partnership, Research Laboratory, Gaborone, Botswana.
Max EssexBotswana Harvard AIDS Institute Partnership, Research Laboratory, Gaborone, Botswana.
Jason T BlackardUniversity of Cincinnati College of Medicine, Cincinnati, OH, USA.
Sikhulile MoyoBotswana Harvard AIDS Institute Partnership, Research Laboratory, Gaborone, Botswana.
Simani GaseitsiweBotswana Harvard AIDS Institute Partnership, Research Laboratory, Gaborone, Botswana. sgaseitsiwe@bhp.org.bw.
Botswana Harvard AIDS Institute Partnership · BWNational University of Science and Technology · ZWUniversity of Botswana · BWUniversity of Cincinnati Medical Center · US

Funding

Stem Cell/Organoid and Genome Editing CoreP30DK078392 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI Alexander Miethke · 2007 to 2026
$24.4M
Partnership for Global Health Research Training Program (Renewal)-Supplement for OBSSR, NCI, NCI-AIDS and NIDCDD43TW010543 · FIC · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI Wafaie W Fawzi, DAVIDSON HOWES HAMER · 2017 to 2026
$12.1M
FIC NIH HHS D43 TW010543NIDDK NIH HHS P30 DK078392Sub-Saharan African Network for TB/HIV Research Excellence (SANTHE), a DELTAS Africa Initiative DEL-15-006
6 · The paper itself

Abstract

backgroundHepatitis C virus (HCV) infection is a major cause of chronic liver disease globally. Direct acting antivirals (DAAs) have proven effective in curing HCV. However, the current standard of care (SOC) in Botswana remains PEGylated interferon-α (IFN-α) with ribavirin. Several mutations have been reported to confer resistance to interferon-based treatments. Therefore, there is a need to determine HCV genotypes in Botswana, as these data will guide new treatment guidelines and understanding of HCV epidemiology in Botswana.

methodsThis was a retrospective cross-sectional pilot study utilizing plasma obtained from 55 participants from Princess Marina Hospital in Gaborone, Botswana. The partial core region of HCV was amplified, and genotypes were determined using phylogenetic analysis.

resultsFour genotype 5a and two genotype 4v sequences were identified. Two significant mutations - K10Q and R70Q - were observed in genotype 5a sequences and have been associated with increased risk of hepatocellular carcinoma (HCC), while R70Q confers resistance to interferon-based treatments.

conclusionGenotypes 5a and 4v are circulating in Botswana. The presence of mutations in genotype 5 suggests that some patients may not respond to IFN-based regimens. The information obtained in this study, in addition to the World health organization (WHO) recommendations, can be utilized by policy makers to implement DAAs as the new SOC for HCV treatment in Botswana.

Indexed as

MutationPhylogenyAdultAntiviral AgentsBotswanaCarcinoma, HepatocellularCross-Sectional StudiesDrug Resistance, ViralFemaleGenotypeHepacivirusHepatitis CHumansInterferon-alphaLiver NeoplasmsMaleAntiviral AgentsInterferon-alphaRibavirinBotswanaDAAGenotypesHCVHepatitis C virusMutations

Identifiers

PMID31640596
PMCPMC6805647
OpenAlexW2982099620

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.