Evidence map›Paper›PMID 31640557›Full record

ArticleBMC plant biology2019

Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production.

Julia Rubio, Evelyn Sánchez, David Tricon, Christian Montes, Jean-Philippe Eyquard, Aurélie Chague, Carlos Aguirre, Humberto Prieto, Véronique Decroocq

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.3field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. DecipheringMetabolites · 2021
    Review
  9. Review
  10. Translational gene regulation in plants: A green new deal.Wiley interdisciplinary reviews. RNA · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Julia RubioBiotechnology Laboratory, La Platina Station, Instituto de Investigaciones Agropecuarias, Santa Rosa 11610, La Pintana, Santiago, Chile.
Evelyn SánchezBiotechnology Laboratory, La Platina Station, Instituto de Investigaciones Agropecuarias, Santa Rosa 11610, La Pintana, Santiago, Chile.
David TriconINRA, UMR 1332 BFP, Equipe de virologie, 71 Avenue Edouard Bourlaux, 33883, Villenave d'Ornon, France.
Christian MontesBiotechnology Laboratory, La Platina Station, Instituto de Investigaciones Agropecuarias, Santa Rosa 11610, La Pintana, Santiago, Chile.
Jean-Philippe EyquardINRA, UMR 1332 BFP, Equipe de virologie, 71 Avenue Edouard Bourlaux, 33883, Villenave d'Ornon, France.
Aurélie ChagueINRA, UMR 1332 BFP, Equipe de virologie, 71 Avenue Edouard Bourlaux, 33883, Villenave d'Ornon, France.
Carlos AguirreBiotechnology Laboratory, La Platina Station, Instituto de Investigaciones Agropecuarias, Santa Rosa 11610, La Pintana, Santiago, Chile.
Humberto PrietoBiotechnology Laboratory, La Platina Station, Instituto de Investigaciones Agropecuarias, Santa Rosa 11610, La Pintana, Santiago, Chile. hprieto@inia.cl.
Véronique DecroocqINRA, UMR 1332 BFP, Equipe de virologie, 71 Avenue Edouard Bourlaux, 33883, Villenave d'Ornon, France. veronique.decroocq@inra.fr.ORCID http://orcid.org/0000-0001-6745-6350
Université de Bordeaux · FRInstituto de Investigaciones Agropecuarias · CLIowa State University · USUniversidad Autónoma de Chile · CLUniversidad Mayor · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIn plants, host factors encoded by susceptibility (S) genes are indispensable for viral infection. Resistance is achieved through the impairment or the absence of those susceptibility factors. Many S genes have been cloned from model and crop species and a majority of them are coding for members of the eukaryotic translation initiation complex, mainly eIF4E, eIF4G and their isoforms. The aim of this study was to investigate the role of those translation initiation factors in susceptibility of stone fruit species to sharka, a viral disease due to Plum pox virus (PPV).

resultsFor this purpose, hairpin-inducing silencing constructs based on Prunus persica orthologs were used to generate Prunus salicina (Japanese plum) 4E and 4G silenced plants by Agrobacterium tumefaciens-mediated transformation and challenged with PPV. While down-regulated eIFiso4E transgenic Japanese plums were not regenerated in our conditions, eIFiso4G11-, but not the eIFiso4G10-, silenced plants displayed durable and stable resistance to PPV. We also investigated the alteration of the si- and mi-RNA profiles in transgenic and wild-type Japanese plums upon PPV infection and confirmed that the newly generated small interfering (si) RNAs, which are derived from the engineered inverted repeat construct, are the major contributor of resistance to sharka.

conclusionsOur results indicate that S gene function of the translation initiation complex isoform is conserved in Prunus species. We discuss the possibilities of using RNAi silencing or loss-of-function mutations of the different isoforms of proteins involved in this complex to breed for resistance to sharka in fruit trees.

Indexed as

Disease ResistanceEukaryotic Initiation FactorsFruitPlant DiseasesPlant ProteinsPlants, Genetically ModifiedPlum Pox VirusProtein IsoformsPrunusRNA InterferenceRNA, PlantRNA, Small InterferingTreesEukaryotic Initiation FactorsPlant ProteinsProtein IsoformsRNA, PlantRNA, Small InterferingPlumResistanceRNAiSharkaSusceptibility geneTranslation initiation factor

Identifiers

PMID31640557
PMCPMC6806492
OpenAlexW2981721459

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.