ArticleBMC genomics2019
Mitochondrial genome in Hypsizygus marmoreus and its evolution in Dikarya.
Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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18 citing papers in PubMed, 24 citations in OpenAlex.
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- Myochromella unveiled: exploring its global distribution through a public database of amplicons.BMC microbiology · 2025Article
- Complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2025Article
- Metabolomics-Based Analysis on the Effect and Metabolic Response of Mycelia by Sawdust Addition fromFoods (Basel, Switzerland) · 2024Article
- The Promoting Mechanism of the Sterile Fermentation Filtrate ofBiomolecules · 2023Article
- Bioactivity and Metabolomic Profile of Extracts Derived from Mycelial Solid Cultures ofMicroorganisms · 2023Article
- Comparative Proteomic Analyses within Three Developmental Stages of the Mushroom WhiteJournal of fungi (Basel, Switzerland) · 2023Article
- Multiple rearrangements and low inter- and intra-species mitogenome sequence variation in theFrontiers in microbiology · 2023Article
- Characterization and phylogenetic analysis of the complete mitochondrial genome of the pathogenic fungus Ilyonectria destructans.Scientific reports · 2022Article
- The complete mitochondrial genome of the edible mushroomMitochondrial DNA. Part B, Resources · 2022Article
- Comparative Proteomic Analysis within the Developmental Stages of the Mushroom WhiteJournal of fungi (Basel, Switzerland) · 2021Article
- Inferring the Phylogenetic Positions of Two Fig Wasp Subfamilies of Epichrysomallinae and Sycophaginae Using Transcriptomes and Mitochondrial Data.Life (Basel, Switzerland) · 2021Article
- The Mitogenomes ofFrontiers in microbiology · 2021Article
- Fungal Mitogenomes: Relevant Features to Planning Plant Disease Management.Frontiers in microbiology · 2020Review
- Editorial: The Significance of Mitogenomics in Mycology.Frontiers in microbiology · 2020Article
- Comparative Analyses of Mitochondrial Genomes Provide Evolutionary Insights Into Nematode-Trapping Fungi.Frontiers in microbiology · 2020Article
Corrections and comments
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Authors and funding
11 authors at 2 institutions in 2 countries.
Funding
Abstract
backgroundHypsizygus marmoreus, a high value commercialized edible mushroom is widely cultivated in East Asia, and has become one of the most popular edible mushrooms because of its rich nutritional and medicinal value. Mitochondria are vital organelles, and play various essential roles in eukaryotic cells.
resultsIn this study, we provide the Hypsizygus marmoreus mitochondrial (mt) genome assembly: the circular sequence is 102,752 bp in size and contains 15 putative protein-coding genes, 2 ribosomal RNAs subunits and 28 tRNAs. We compared the mt genomes of the 27 fungal species in the Pezizomycotina and Basidiomycotina subphyla, with the results revealing that H. marmoreus is a sister to Tricholoma matsutake and the phylogenetic distribution of this fungus based on the mt genome. Phylogenetic analysis shows that Ascomycetes mitochondria started to diverge earlier than that of Basidiomycetes and supported the robustness of the hyper metric tree. The fungal sequences are highly polymorphic and gene order varies significantly in the dikarya data set, suggesting a correlation between the gene order and divergence time in the fungi mt genome. To detect the mt genome variations in H. marmoreus, we analyzed the mtDNA sequences of 48 strains. The phylogeny and variation sited type statistics of H. marmoreus provide clear-cut evidence for the existence of four well-defined cultivations isolated lineages, suggesting female ancestor origin of H. marmoreus. Furthermore, variations on two loci were further identified to be molecular markers for distinguishing the subgroup containing 32 strains of other strains. Fifteen conserved protein-coding genes of mtDNAs were analyzed, with fourteen revealed to be under purifying selection in the examined fungal species, suggesting the rapid evolution was caused by positive selection of this gene.
conclusionsOur studies have provided new reference mt genomes and comparisons between species and intraspecies with other strains, and provided future perspectives for assessing diversity and origin of H. marmoreus.
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