Evidence map›Paper›PMID 31640341›Full record

ArticleAnalytical chemistry2019

Super-Resolution Reconstruction for Two- and Three-Dimensional LA-ICP-MS Bioimaging.

Mika T Westerhausen, David P Bishop, Annette Dowd, Jonathan Wanagat, Nerida Cole, Philip A Doble

Open access · greenAbstract read
In one paragraph

Article in Analytical chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Quantitative Mass Spectrometry Imaging of Biological Systems.Annual review of physical chemistry · 2021
    Review
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  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Mika T WesterhausenThe Atomic Medicine Initiative, School of Mathematical and Physical Sciences , University of Technology Sydney , Broadway , NSW 2007 , Australia.
David P BishopThe Atomic Medicine Initiative, School of Mathematical and Physical Sciences , University of Technology Sydney , Broadway , NSW 2007 , Australia.ORCID 0000-0002-6533-4410
Annette DowdSchool of Mathematical and Physical Sciences , University of Technology Sydney , Broadway NSW 2007 , Australia.
Jonathan WanagatDepartment of Medicine, Division of Geriatrics , David Geffen School of Medicine, University of California , Los Angeles , California , United States.
Nerida ColeFaculty of Science, Engineering and Technology , Swinburne University of Technology , John Street , Hawthorn , Victoria 3122 , Australia.
Philip A DobleThe Atomic Medicine Initiative, School of Mathematical and Physical Sciences , University of Technology Sydney , Broadway , NSW 2007 , Australia.ORCID 0000-0002-8472-1301
University of Technology Sydney · AUSwinburne University of Technology · AUUniversity of California, Los Angeles · US

Funding

UCLA OLDER AMERICANS INDEPENDENCE CENTERP30AG028748 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI REUBEN, DAVID B. · 2006 to 2017
$9.8M
UCLA Muscular Dystrophy Core CenterP30AR057230 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SPENCER, MELISSA JAN · 2009 to 2018
$6.2M
Mitochondrial biogenesis, genetics and cell loss in mammalian agingR01AG055518 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AIKEN, JUDD M., HERBST, ALLEN · 2017 to 2022
$2.0M
Mitochondrial biogenesis, genetics and cell loss in mammalian agingK02AG059847 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WANAGAT, JONATHAN · 2018 to 2022
$801k
Mitochondrial DNA Deletion Mutations: Biomarkers of AgingR56AG060880 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AIKEN, JUDD M., ALLISON, DAVID B · 2018 to 2018
$574k
Quantitative imaging of the dystrophin-glycoprotein complexR21AR072950 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DOBLE, PHILIP, WANAGAT, JONATHAN · 2019 to 2020
$357k
NIAMS NIH HHS P30 AR057230NIAMS NIH HHS R21 AR072950NIA NIH HHS K02 AG059847NIA NIH HHS P30 AG028748NIA NIH HHS R01 AG055518NIA NIH HHS R56 AG060880
6 · The paper itself

Abstract

The resolution of laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS) elemental bioimaging is usually constrained by the diameter of the laser spot size and is often not adequate to explore in situ subcellular distributions of elements and proteins in biological tissue sections. Super-resolution reconstruction is a method typically used for many imaging modalities and combines multiple lower resolution images to create a higher resolution image. Here, we present a super-resolution reconstruction method for LA-ICP-MS imaging by ablating consecutive layers of a biological specimen with offset orthogonal scans, resulting in a 10× improvement in resolution for quantitative measurement of dystrophin in murine muscle fibers. Layer-by-layer image reconstruction was also extended to the third dimension without the requirement of image registration across multiple thin section specimens. Quantitative super-resolution reconstruction, combined with Gaussian filtering and application of the Richardson-Lucy total variation algorithm, provided superior image clarity and fidelity in two- and three-dimensions.

Indexed as

AlgorithmsAnimalsDystrophinGene ExpressionImage Processing, Computer-AssistedImaging, Three-DimensionalLaser TherapyMaleMiceMice, Inbred C57BLMicrotomyMuscle Fibers, SkeletalQuadriceps MuscleSpectrophotometry, AtomicDystrophin

Identifiers

PMID31640341
PMCPMC7232986
OpenAlexW2981875068

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.