Evidence map›Paper›PMID 31639823›Full record

ArticleJournal of experimental botany2020

Sigma factor 1 in chloroplast gene transcription and photosynthetic light acclimation.

Lauren A Macadlo, Iskander M Ibrahim, Sujith Puthiyaveetil

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Regreening mechanisms in cucumber: insights from a CsSIG2 mutation affecting chloroplast development.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
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  10. Maize ANT1 modulates vascular development, chloroplast development, photosynthesis, and plant growth.Proceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Lauren A MacadloDepartment of Biochemistry and Purdue Center for Plant Biology, Purdue University, West Lafayette, IN 47906, USA.
Iskander M IbrahimDepartment of Biochemistry and Purdue Center for Plant Biology, Purdue University, West Lafayette, IN 47906, USA.
Sujith PuthiyaveetilDepartment of Biochemistry and Purdue Center for Plant Biology, Purdue University, West Lafayette, IN 47906, USA.
Purdue University West Lafayette · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sigma factors are dissociable subunits of bacterial RNA polymerase that ensure efficient transcription initiation from gene promoters. Owing to their prokaryotic origin, chloroplasts possess a typical bacterial RNA polymerase together with its sigma factor subunit. The higher plant Arabidopsis thaliana contain as many as six sigma factors for the hundred or so of its chloroplast genes. The role of this relatively large number of transcription initiation factors for the miniature chloroplast genome, however, is not fully understood. Using two Arabidopsis T-DNA insertion mutants, we show that sigma factor 1 (SIG1) initiates transcription of a specific subset of chloroplast genes. We further show that the photosynthetic control of PSI reaction center gene transcription requires complementary regulation of the nuclear SIG1 gene at the transcriptional level. This SIG1 gene regulation is dependent on both a plastid redox signal and a light signal transduced by the phytochrome photoreceptor.

Indexed as

AcclimatizationGene Expression Regulation, PlantPhotosynthesisArabidopsisChloroplastsPlant ProteinsSigma FactorPlant ProteinsSigma Factorsigma factor Sig1Chloroplast gene transcriptionlight acclimationphotosynthesisphotosystem stoichiometry adjustmentphytochromeredox signalingsigma factor 1transcriptional control

Identifiers

PMID31639823
PMCPMC6977190
OpenAlexW2981692196

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.