Evidence map›Paper›PMID 31639337›Full record

ArticleDevelopmental biology2020

Effector gene expression underlying neuron subtype-specific traits in the Motor Ganglion of Ciona.

Susanne Gibboney, Jameson Orvis, Kwantae Kim, Christopher J Johnson, Paula Martinez-Feduchi, Elijah K Lowe, Sarthak Sharma, Alberto Stolfi

Open access · greenAbstract read
In one paragraph

Article in Developmental biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Similarities betweeneNeuro · 2026
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  7. Development and circuitry of the tunicate larval Motor Ganglion, a putative hindbrain/spinal cord homolog.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2024
    Review
  8. Article
  9. Transitions of motor neuron activities duringFrontiers in cell and developmental biology · 2023
    Article
  10. Two distinct evolutionary conserved neural degeneration pathways characterized in a colonial chordate.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Article
  12. Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Susanne GibboneySchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA.
Jameson OrvisSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA.
Kwantae KimSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA.
Christopher J JohnsonSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA.
Paula Martinez-FeduchiSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA.
Elijah K LoweSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA.
Sarthak SharmaSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA.
Alberto StolfiSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA. Electronic address: alberto.stolfi@biosci.gatech.edu.
Georgia Institute of Technology · US

Funding

The Jackson Laboratory KOMP2 Phenotyping CenterU54HG006332 · NHGRI · JACKSON LABORATORY · PI BRAUN, ROBERT E, SVENSON, KAREN L · 2011 to 2015
$12.8M
Tissue-specific regulation of cellular morphogenesis during embryonic development of the invertebrate chordate Ciona intestinalisR00HD084814 · NICHD · GEORGIA INSTITUTE OF TECHNOLOGY · PI STOLFI, ALBERTO · 2017 to 2019
$592k
Tissue-specific regulation of cellular morphogenesis during embryonic development of the invertebrate chordate Ciona intestinalisK99HD084814 · NICHD · NEW YORK UNIVERSITY · PI STOLFI, ALBERTO · 2016 to 2017
$188k
NHGRI NIH HHS U54 HG006332NICHD NIH HHS K99 HD084814NICHD NIH HHS R00 HD084814
6 · The paper itself

Abstract

The central nervous system of the Ciona larva contains only 177 neurons. The precise regulation of neuron subtype-specific morphogenesis and differentiation observed during the formation of this minimal connectome offers a unique opportunity to dissect gene regulatory networks underlying chordate neurodevelopment. Here we compare the transcriptomes of two very distinct neuron types in the hindbrain/spinal cord homolog of Ciona, the Motor Ganglion (MG): the Descending decussating neuron (ddN, proposed homolog of Mauthner Cells in vertebrates) and the MG Interneuron 2 (MGIN2). Both types are invariantly represented by a single bilaterally symmetric left/right pair of cells in every larva. Supernumerary ddNs and MGIN2s were generated in synchronized embryos and isolated by fluorescence-activated cell sorting for transcriptome profiling. Differential gene expression analysis revealed ddN- and MGIN2-specific enrichment of a wide range of genes, including many encoding potential "effectors" of subtype-specific morphological and functional traits. More specifically, we identified the upregulation of centrosome-associated, microtubule-stabilizing/bundling proteins and extracellular guidance cues part of a single intrinsic regulatory program that might underlie the unique polarization of the ddNs, the only descending MG neurons that cross the midline. Consistent with our predictions, CRISPR/Cas9-mediated, tissue-specific elimination of two such candidate effectors, Efcab6-related and Netrin1, impaired ddN polarized axon outgrowth across the midline.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsAxon GuidanceCalcium-Binding ProteinsCentral Nervous SystemCentrosomeCiona intestinalisConnectomeCRISPR-Cas SystemsEmbryo, NonmammalianGanglia, InvertebrateGene EditingInterneuronsLarvaMicrotubulesMotor NeuronsCalcium-Binding ProteinsNerve Tissue ProteinsNetrin-1Repressor Proteins

Identifiers

PMID31639337
PMCPMC6987015
OpenAlexW2980560327

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.