Evidence map›Paper›PMID 31639235›Full record

ArticleThe Plant journal : for cell and molecular biology2020

The formation of perinucleolar bodies is important for normal leaf development and requires the zinc-finger DNA-binding motif in Arabidopsis ASYMMETRIC LEAVES2.

Lilan Luo, Sayuri Ando, Yuki Sakamoto, Takanori Suzuki, Hiro Takahashi, Nanako Ishibashi, Shoko Kojima, Daisuke Kurihara, Tetsuya Higashiyama, Kotaro T Yamamoto and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.3field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Genome-Wide Analysis of MYB Genes inInternational journal of molecular sciences · 2023
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  3. Genome-Wide Identification ofInternational journal of molecular sciences · 2023
    Article
  4. Article
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  7. Article
  8. Review
  9. Patterning a Leaf by Establishing Polarities.Frontiers in plant science · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 1 country.

Lilan Luo *Division of Biological Science, Graduate School of Science, Nagoya University, Nagoya, Aichi, 464-8602, Japan.
Sayuri Ando *Graduate School of Bioscience and Biotechnology, Chubu University, Kasugai, Aichi, 487-8501, Japan.
Yuki Sakamoto *Department of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Noda, Chiba, 278-8510, Japan.
Takanori SuzukiDivision of Biological Science, Graduate School of Science, Nagoya University, Nagoya, Aichi, 464-8602, Japan.
Hiro TakahashiGraduate School of Medical Sciences, Kanazawa University, Kakuma-machi, Kanazawa, Ishikawa, 920-1192, Japan.
Nanako IshibashiDivision of Biological Science, Graduate School of Science, Nagoya University, Nagoya, Aichi, 464-8602, Japan.
Shoko KojimaGraduate School of Bioscience and Biotechnology, Chubu University, Kasugai, Aichi, 487-8501, Japan.
Daisuke KuriharaJST, PRESTO, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8601, Japan.
Tetsuya HigashiyamaDivision of Biological Science, Graduate School of Science, Nagoya University, Nagoya, Aichi, 464-8602, Japan.
Kotaro T YamamotoDivision of Biological Sciences, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan.
Sachihiro MatsunagaDepartment of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Noda, Chiba, 278-8510, Japan.
Chiyoko MachidaGraduate School of Bioscience and Biotechnology, Chubu University, Kasugai, Aichi, 487-8501, Japan.
Michiko SasabeDepartment of Biology, Faculty of Agriculture and Life Science, Hirosaki University, 3 Bunkyo-cho, Hirosaki, 036-8561, Japan.
Yasunori MachidaDivision of Biological Science, Graduate School of Science, Nagoya University, Nagoya, Aichi, 464-8602, Japan.ORCID 0000-0002-2764-918X
Nagoya University · JPChubu University · JPTokyo University of Science · JPHirosaki University · JPHokkaido University of Science · JPIshihara Sangyo Kaisha (Japan) · JPKanazawa University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Arabidopsis, the ASYMMETRIC LEAVES2 (AS2) protein plays a key role in the formation of flat symmetric leaves via direct repression of the abaxial gene ETT/ARF3. AS2 encodes a plant-specific nuclear protein that contains the AS2/LOB domain, which includes a zinc-finger (ZF) motif that is conserved in the AS2/LOB family. We have shown that AS2 binds to the coding DNA of ETT/ARF3, which requires the ZF motif. AS2 is co-localized with AS1 in perinucleolar bodies (AS2 bodies). To identify the amino acid signals in AS2 required for formation of AS2 bodies and function(s) in leaf formation, we constructed recombinant DNAs that encoded mutant AS2 proteins fused to yellow fluorescent protein. We examined the subcellular localization of these proteins in cells of cotyledons and leaf primordia of transgenic plants and cultured cells. The amino acid signals essential for formation of AS2 bodies were located within and adjacent to the ZF motif. Mutant AS2 that failed to form AS2 bodies also failed to rescue the as2-1 mutation. Our results suggest the importance of the formation of AS2 bodies and the nature of interactions of AS2 with its target DNA and nucleolar factors including NUCLEOLIN1. The partial overlap of AS2 bodies with perinucleolar chromocenters with condensed ribosomal RNA genes implies a correlation between AS2 bodies and the chromatin state. Patterns of AS2 bodies in cells during interphase and mitosis in leaf primordia were distinct from those in cultured cells, suggesting that the formation and distribution of AS2 bodies are developmentally modulated in plants.

Indexed as

ArabidopsisArabidopsis ProteinsCotyledonDNA-Binding ProteinsMutationPhenotypePlant LeavesPlants, Genetically ModifiedProtein DomainsTranscription FactorsZinc FingersArabidopsis ProteinsAS2 protein, ArabidopsisDNA-Binding ProteinsETT protein, ArabidopsisTranscription Factors45S ribosomal RNA geneschromocenterepigenetic factor AS2ETTIN/AUXIN RESEPONSE FACTOR3nucleolusperinucleolar bodyzinc-finger motif

Identifiers

PMID31639235
PMCPMC7155070
OpenAlexW2981931681

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.