Evidence map›Paper›PMID 31639176›Full record

ArticlePloS one2019

Allele-specific enhancer interaction at the Peg3 imprinted domain.

Joomyeong Kim, Wesley D Frey, Kaustubh Sharma, Subash Ghimire, Ryoichi Teruyama, Lisa Stubbs

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Joomyeong KimDepartment of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, United States of America.ORCID 0000-0001-6577-5526
Wesley D FreyDepartment of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, United States of America.
Kaustubh SharmaDepartment of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, United States of America.
Subash GhimireDepartment of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, United States of America.ORCID 0000-0001-9544-4410
Ryoichi TeruyamaDepartment of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, United States of America.ORCID 0000-0002-9356-8310
Lisa StubbsCell and Developmental Biology, Institute for Genomic Biology, University of Illinois, Urbana, Illinois, United States of America.
Louisiana State University · USUniversity of Illinois Urbana-Champaign · US

Funding

Imprinting studies of a paternally expressed Usp29 geneR01GM066225 · NIGMS · UNIVERSITY OF CALIF-LAWRNC LVRMR NAT LAB · PI KIM, JOOMYEONG · 2004 to 2013
$2.6M
Analysis of force developed by a AAA ATPaseR01GM097974 · NIGMS · ROCKEFELLER UNIVERSITY · PI SIMON, SANFORD M · 2011 to 2014
$1.2M
Aebp2 as an epigenetic regulator for neural crest cellR01GM097074 · NIGMS · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI KIM, JOOMYEONG · 2013 to 2016
$1.1M
NIGMS NIH HHS R01 GM066225NIGMS NIH HHS R01 GM097074NIGMS NIH HHS R01 GM097974
6 · The paper itself

Abstract

The parental allele specificity of mammalian imprinted genes has been evolutionarily well conserved, although its functional constraints and associated mechanisms are not fully understood. In the current study, we generated a mouse mutant with switched active alleles driving the switch from paternal-to-maternal expression for Peg3 and the maternal-to-paternal expression for Zim1. The expression levels of Peg3 and Zim1, but not the spatial expression patterns, within the brain showed clear differences between wild type and mutant animals. We identified putative enhancers localized upstream of Peg3 that displayed allele-biased DNA methylation, and that also participate in allele-biased chromosomal conformations with regional promoters. Most importantly, these data suggest for the first time that long-distance enhancers may contribute to allelic expression within imprinted domains through allele-biased interactions with regional promoters.

Indexed as

AllelesGenomic ImprintingAnimalsChromosomes, MammalianDNA-Binding ProteinsDNA MethylationEnhancer Elements, GeneticFemaleGene Expression Regulation, EnzymologicKruppel-Like Transcription FactorsMaleMiceMutationNerve Tissue ProteinsDNA-Binding ProteinsKruppel-Like Transcription FactorsNerve Tissue ProteinsPeg3 protein, mouseZim1 protein, mouse

Identifiers

PMID31639176
PMCPMC6804975
OpenAlexW2981476830

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.