Evidence map›Paper›PMID 31638317›Full record

ArticleGenes to cells : devoted to molecular & cellular mechanisms2019

Super-resolution imaging reveals changes in Escherichia coli SSB localization in response to DNA damage.

Tianyu Zhao, Yan Liu, Zilin Wang, Rongyan He, Jia Xiang Zhang, Feng Xu, Ming Lei, Michael B Deci, Juliane Nguyen, Piero R Bianco

Open access · bronzeAbstract read
In one paragraph

Article in Genes to cells : devoted to molecular & cellular mechanisms, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 45 citations in OpenAlex.

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  14. Generation and Repair of Postreplication Gaps in Escherichia coli.Microbiology and molecular biology reviews : MMBR · 2023
    Review
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  17. Regulation of ssb Gene Expression in Escherichia coliInternational journal of molecular sciences · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Tianyu ZhaoXi'an Institute of Optics and Precision Mechanics, Chinese Academy of Sciences, State Key Laboratory of Transient Optics and Photonics, Xi'an, China.
Yan LiuThe Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, Shaanxi, China.
Zilin WangCenter for Single Molecule Biophysics and, Department of Microbiology and Immunology, University at Buffalo, Buffalo, NY, USA.
Rongyan HeThe Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, Shaanxi, China.
Jia Xiang ZhangCenter for Single Molecule Biophysics and, Department of Microbiology and Immunology, University at Buffalo, Buffalo, NY, USA.
Feng XuThe Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, Shaanxi, China.
Ming LeiXi'an Institute of Optics and Precision Mechanics, Chinese Academy of Sciences, State Key Laboratory of Transient Optics and Photonics, Xi'an, China.
Michael B DeciDepartment of Pharmaceutical Sciences, School of Pharmacy, University at Buffalo, Buffalo, NY, USA.
Juliane NguyenDepartment of Pharmaceutical Sciences, School of Pharmacy, University at Buffalo, Buffalo, NY, USA.
Piero R BiancoCenter for Single Molecule Biophysics and, Department of Microbiology and Immunology, University at Buffalo, Buffalo, NY, USA.ORCID https://orcid.org/0000-0003-2974-7952
University at Buffalo, State University of New York · USXi'an Jiaotong University · CNXi'an Institute of Optics and Precision Mechanics · CN

Funding

Mechanistic studies of stalled DNA replication fork rescueR01GM100156 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI BIANCO, PIERO R, LYUBCHENKO, YURI L · 2013 to 2021
$4.0M
RNA EXO-Codes: A novel way to reprogram pathological exosomesR01EB023262 · NIBIB · UNIV OF NORTH CAROLINA CHAPEL HILL · PI NGUYEN, JULIANE · 2017 to 2020
$1.7M
Natural Science Foundation of China 61522511NIBIB NIH HHS R01 EB023262NIGMS NIH HHS GM10056NIGMS NIH HHS R01 GM100156NIH HHS EB023262
6 · The paper itself

Abstract

The E. coli single-stranded DNA-binding protein (SSB) is essential to viability. It plays key roles in DNA metabolism where it binds to nascent single strands of DNA and to target proteins known as the SSB interactome. There are >2,000 tetramers of SSB per cell with 100-150 associated with the genome at any one time, either at DNA replication forks or at sites of repair. The remaining 1,900 tetramers could constantly diffuse throughout the cytosol or be associated with the inner membrane as observed for other DNA metabolic enzymes. To visualize SSB localization and to ascertain potential spatiotemporal changes in response to DNA damage, SSB-GFP chimeras were visualized using a novel, super-resolution microscope optimized for the study of prokaryotic cells. In the absence of DNA damage, SSB localizes to a small number of foci and the excess protein is associated with the inner membrane where it binds to the major phospholipids. Within five minutes following DNA damage, the vast majority of SSB disengages from the membrane and is found almost exclusively in the cell interior. Here, it is observed in a large number of foci, in discreet structures or, in diffuse form spread over the genome, thereby enabling repair events.

Indexed as

DNA DamageCell MembraneDNA-Binding ProteinsEscherichia coliEscherichia coli ProteinsGreen Fluorescent ProteinsProtein MultimerizationProtein TransportRecombinant ProteinsSingle-Cell AnalysisDNA-Binding ProteinsEscherichia coli ProteinsGreen Fluorescent ProteinsRecombinant ProteinsSSB protein, E coliDNA repairDNA replicationE. coliOB-foldsingle-strand DNA-binding proteinSSB interactomesuper-resolution microscopy

Identifiers

PMID31638317
PMCPMC7065570
OpenAlexW2982280598

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.