Evidence map›Paper›PMID 31638221›Full record

ArticleMolecular medicine reports2019

Upregulation of miR‑132‑3p in cholangiocarcinoma tissues: A study based on RT‑qPCR, The Cancer Genome Atlas miRNA sequencing, Gene Expression Omnibus microarray data and bioinformatics analyses.

Hua-Yu Wu, Shuang Xia, An-Gui Liu, Min-Da Wei, Zhong-Biao Chen, Yu-Xin Li, Yu He, Min-Jun Liao, Qi-Ping Hu, Shang-Ling Pan

Open access · hybridAbstract read
In one paragraph

Article in Molecular medicine reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Hua-Yu WuDepartment of Pathophysiology, School of Pre‑clinical Medicine, Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region 530021, P.R. China.
Shuang XiaDepartment of Human Anatomy, School of Pre‑clinical Medicine, Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region 530021, P.R. China.
An-Gui LiuDepartment of Pathophysiology, School of Pre‑clinical Medicine, Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region 530021, P.R. China.
Min-Da WeiDepartment of Pathophysiology, School of Pre‑clinical Medicine, Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region 530021, P.R. China.
Zhong-Biao ChenDepartment of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region 530021, P.R. China.
Yu-Xin LiDepartment of Pathophysiology, School of Pre‑clinical Medicine, Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region 530021, P.R. China.
Yu HeDepartment of Pathophysiology, School of Pre‑clinical Medicine, Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region 530021, P.R. China.
Min-Jun LiaoDepartment of Pathophysiology, School of Pre‑clinical Medicine, Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region 530021, P.R. China.
Qi-Ping HuDepartment of Cell Biology and Genetics, School of Pre‑clinical Medicine, Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region 530021, P.R. China.
Shang-Ling PanDepartment of Pathophysiology, School of Pre‑clinical Medicine, Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region 530021, P.R. China.
Guangxi Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MicroRNAs (miRNAs/miRs) have been reported to be closely associated with numerous human diseases, including cholangiocarcinoma (CCA). However, the number of miRNAs known to be involved in CCA is limited, and the association between miR‑132‑3p and CCA remains unknown. In the present study, the clinical role of miR‑132‑3p and its potential signaling pathways were investigated by multiple approaches. Reverse transcription‑quantitative PCR (RT‑qPCR), CCA‑associated Gene Expression Omnibus (GEO), ArrayExpress and Sequence Read Archive (SRA) miRNA‑microarray or miRNA‑sequencing data were screened, and meta‑analyses were conducted, in order to calculate the receiver operating characteristic (ROC) curve and standardized mean difference (SMD). The predicted target genes of miR‑132‑3p were obtained from 12 online databases and were combined with the downregulated differentially expressed genes identified in the RNA‑sequencing data of CCA. Gene Ontology annotation and pathway analysis were performed in WebGestalt. Protein‑protein interaction analyses were conducted in STRING. The Cancer Genome Atlas (TCGA) mRNA expression profiles were used to validate the expression levels of hub genes at the mRNA level. The Human Protein Atlas was used to identify the protein expression levels of hub genes in CCA tissues and non‑tumor biliary epithelium. The meta‑analyses comprised 10 groups of RT‑qPCR data, eight GEO microarray datasets and one TCGA miRNA‑sequencing dataset. The SMD of miR‑132‑3p in CCA was 0.75 (95% CI: 0.25, 1.24), which indicated that miR‑132‑3p was overexpressed in CCA tissues. This finding was supported by a summary ROC value of 0.80 (95% CI: 0.76, 0.83). The pooled sensitivity and specificity were 0.81 (95% CI: 0.59, 0.93) and 0.71 (95% CI: 0.58, 0.81), respectively. The relative expression level of miR‑132‑3p in the early stage of CCA (stages I‑II) was 6.8754±0.5279, which was markedly lower than that in the advanced stage (stages III‑IVB), 7.3034±0.3267 (P=0.003). Consistently, the miR‑132‑3p level in low‑grade CCA (grades G1‑G2) was 6.7581±0.5297, whereas it was 7.1191±0.4651 in patients with high‑grade CCA (grades G3‑G4) (P=0.037). Furthermore, 555 potential target genes of miR‑132‑3p in CCA were mainly enriched in the 'Focal Adhesion‑PI3K‑Akt‑mTOR‑signaling pathway'. In conclusion, upregulation of miR‑132‑3p may serve a pivotal role in the tumorigenesis and progression of CCA by targeting different pathways. Further in vitro and in vivo studies are required to support the current findings.

Indexed as

Gene Expression Regulation, NeoplasticAdultAgedBile Duct NeoplasmsCholangiocarcinomaFemaleGene Expression ProfilingGene OntologyGenomicsHumansMaleMicroRNAsMiddle AgedSequence Analysis, RNATranscriptomeUp-RegulationMicroRNAsMIRN132 microRNA, human

Identifiers

PMID31638221
PMCPMC6854587
OpenAlexW2977785391

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.