Evidence map›Paper›PMID 31636811›Full record

ArticleProceedings. IEEE International Symposium on Biomedical Imaging2017

DEEP LEARNING-BASED ASSESSMENT OF TUMOR-ASSOCIATED STROMA FOR DIAGNOSING BREAST CANCER IN HISTOPATHOLOGY IMAGES.

Babak Ehteshami Bejnordi, Jimmy Lin, Ben Glass, Maeve Mullooly, Gretchen L Gierach, Mark E Sherman, Nico Karssemeijer, Jeroen van der Laak, Andrew H Beck

Abstract read
In one paragraph

Article in Proceedings. IEEE International Symposium on Biomedical Imaging, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Review
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  4. Hard Negative Sample Mining for Whole Slide Image Classification.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2024
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  5. Review
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  10. Multi-magnification-based machine learning as an ancillary tool for the pathologic assessment of shaved margins for breast carcinoma lumpectomy specimens.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2021
    Article
  11. Review
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  20. Using deep convolutional neural networks to identify and classify tumor-associated stroma in diagnostic breast biopsies.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Babak Ehteshami BejnordiDiagnostic Image Analysis Group, Radboud University Medical Center, Nijmegen, Netherlands.
Jimmy LinThe Harker School, San Jose, CA, USA.
Ben GlassBeth Israel Deaconess Medical Center, Harvard Medical School, MA, USA.
Maeve MulloolyDivision of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, MD, USA.
Gretchen L GierachDivision of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, MD, USA.
Mark E ShermanMayo Clinic, Jacksonville, FL, USA.
Nico KarssemeijerDiagnostic Image Analysis Group, Radboud University Medical Center, Nijmegen, Netherlands.
Jeroen van der LaakDiagnostic Image Analysis Group, Radboud University Medical Center, Nijmegen, Netherlands.
Andrew H BeckBeth Israel Deaconess Medical Center, Harvard Medical School, MA, USA.

Funding

Hormone-Related CancersZIACP010126 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI GIERACH, GRETCHEN · 2009 to 2025
$103.5M
Intramural NIH HHS ZIA CP010126
6 · The paper itself

Abstract

Diagnosis of breast carcinomas has so far been limited to the morphological interpretation of epithelial cells and the assessment of epithelial tissue architecture. Consequently, most of the automated systems have focused on characterizing the epithelial regions of the breast to detect cancer. In this paper, we propose a system for classification of hematoxylin and eosin (H&E) stained breast specimens based on convolutional neural networks that primarily targets the assessment of tumor-associated stroma to diagnose breast cancer patients. We evaluate the performance of our proposed system using a large cohort containing 646 breast tissue biopsies. Our evaluations show that the proposed system achieves an area under ROC of 0.92, demonstrating the discriminative power of previously neglected tumor associated stroma as a diagnostic biomarker.

Indexed as

Breast CancerConvolutional Neural NetworksDigital pathologyTumor Associated Stroma

Identifiers

PMID31636811
PMCPMC6802272

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.