Evidence map›Paper›PMID 31636357›Full record

ArticleScientific reports2019

Active nitrogen fixation by Crocosphaera expands their niche despite the presence of ammonium - A case study.

Keisuke Inomura, Takako Masuda, Julia M Gauglitz

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.5field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Phosphorus limitation heightens vulnerability ofFrontiers in microbiology · 2025
    Article
  3. Article
  4. Article
  5. A diazotrophy-ammoniotrophy dual growth model for the sulfate reducing bacteriumComputational and structural biotechnology journal · 2023
    Article
  6. Microbiology spectrum · 2022
    Article
  7. Article
  8. QuantifyingComputational and structural biotechnology journal · 2021
    Article
  9. Article
  10. Quantitative models of nitrogen-fixing organisms.Computational and structural biotechnology journal · 2020
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Keisuke InomuraSchool of Oceanography, University of Washington, Seattle, Washington, USA. ki24@uw.edu.
Takako MasudaInstitute of Microbiology, The Czech Academy of Sciences, Opatovický mlýn, Třeboň, Czech Republic.
Julia M GauglitzCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, USA.
Czech Academy of Sciences, Institute of Microbiology · CZUniversity of Washington · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Unicellular nitrogen fixer Crocosphaera contributes substantially to nitrogen fixation in oligotrophic subtropical gyres. They fix nitrogen even when significant amounts of ammonium are available. This has been puzzling since fixing nitrogen is energetically inefficient compared with using available ammonium. Here we show that by fixing nitrogen, Crocosphaera can increase their population and expand their niche despite the presence of ammonium. We have developed a simple but mechanistic model of Crocosphaera based on their growth in steady state culture. The model shows that the growth of Crocosphaera can become nitrogen limited despite their capability to fix nitrogen. When they fix nitrogen, the population increases by up to 78% relative to the case without nitrogen fixation. When we simulate a simple ecological situation where Crocosphaera exists with non-nitrogen-fixing phytoplankton, the relative abundance of Crocosphaera increases with nitrogen fixation, while the population of non-nitrogen-fixing phytoplankton decreases since a larger fraction of fixed nitrogen is consumed by Crocosphaera. Our study quantitatively supports the benefit of nitrogen fixation despite the high electron/energy costs, even when an energetically efficient alternative is available. It demonstrates a competitive aspect of Crocosphaera, permitting them to be regionally significant nitrogen fixers.

Indexed as

Ammonium CompoundsCarbonComputer SimulationCyanobacteriaModels, BiologicalNitrogenNitrogen FixationPhosphorusPhytoplanktonAmmonium CompoundsCarbonNitrogenPhosphorus

Identifiers

PMID31636357
PMCPMC6803696
OpenAlexW2981028729

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.