Evidence map›Paper›PMID 31636214›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Graded regulation of cellular quiescence depth between proliferation and senescence by a lysosomal dimmer switch.

Kotaro Fujimaki, Ruoyan Li, Hengyu Chen, Kimiko Della Croce, Hao Helen Zhang, Jianhua Xing, Fan Bai, Guang Yao

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed, 1 pooled it
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 1 synthesis or guideline pooled it, 137 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Quiescence Multiverse.Biomolecules · 2025
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Kotaro FujimakiDepartment of Molecular and Cellular Biology, University of Arizona, Tucson, AZ 85721.
Ruoyan LiBiomedical Pioneering Innovation Center, School of Life Sciences, Peking University, 100871 Beijing, China.
Hengyu ChenBiomedical Pioneering Innovation Center, School of Life Sciences, Peking University, 100871 Beijing, China.
Kimiko Della CroceDepartment of Molecular and Cellular Biology, University of Arizona, Tucson, AZ 85721.
Hao Helen ZhangDepartment of Mathematics, University of Arizona, Tucson, AZ 85721.
Jianhua XingDepartment of Computational and Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15260.
Fan BaiBiomedical Pioneering Innovation Center, School of Life Sciences, Peking University, 100871 Beijing, China; fbai@pku.edu.cn guangyao@arizona.edu.
Guang YaoDepartment of Molecular and Cellular Biology, University of Arizona, Tucson, AZ 85721; fbai@pku.edu.cn guangyao@arizona.edu.
University of Arizona · USPeking University · CNUniversity of Pittsburgh · US

Funding

Role of the Snail1-Twist-p21 axis on cell cycle arrest and renal fibrosis developmentR01DK119232 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI XING, JIANHUA · 2019 to 2022
$1.4M
NIDDK NIH HHS R01 DK119232
6 · The paper itself

Abstract

The reactivation of quiescent cells to proliferate is fundamental to tissue repair and homeostasis in the body. Often referred to as the G0 state, quiescence is, however, not a uniform state but with graded depth. Shallow quiescent cells exhibit a higher tendency to revert to proliferation than deep quiescent cells, while deep quiescent cells are still fully reversible under physiological conditions, distinct from senescent cells. Cellular mechanisms underlying the control of quiescence depth and the connection between quiescence and senescence are poorly characterized, representing a missing link in our understanding of tissue homeostasis and regeneration. Here we measured transcriptome changes as rat embryonic fibroblasts moved from shallow to deep quiescence over time in the absence of growth signals. We found that lysosomal gene expression was significantly up-regulated in deep quiescence, and partially compensated for gradually reduced autophagy flux. Reducing lysosomal function drove cells progressively deeper into quiescence and eventually into a senescence-like irreversibly arrested state; increasing lysosomal function, by lowering oxidative stress, progressively pushed cells into shallower quiescence. That is, lysosomal function modulates graded quiescence depth between proliferation and senescence as a dimmer switch. Finally, we found that a gene-expression signature developed by comparing deep and shallow quiescence in fibroblasts can correctly classify a wide array of senescent and aging cell types in vitro and in vivo, suggesting that while quiescence is generally considered to protect cells from irreversible arrest of senescence, quiescence deepening likely represents a common transition path from cell proliferation to senescence, related to aging.

Indexed as

Cell ProliferationCellular SenescenceAnimalsCell DivisionFibroblastsGene ExpressionLysosomesOxidative StressRatsagingdormancylysosomequiescencesenescence

Identifiers

PMID31636214
PMCPMC6842626
OpenAlexW2981661900

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.