Evidence map›Paper›PMID 31636205›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

A packing for A-form DNA in an icosahedral virus.

Fengbin Wang, Ying Liu, Zhangli Su, Tomasz Osinski, Guilherme A P de Oliveira, James F Conway, Stefan Schouten, Mart Krupovic, David Prangishvili, Edward H Egelman

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Widespread Horizontal Gene Transfer Among Animal Viruses.bioRxiv : the preprint server for biology · 2024
    Article
  5. The Expanding Diversity of Viruses from Extreme Environments.International journal of molecular sciences · 2024
    Review
  6. Article
  7. Article
  8. Cellular homologs of the double jelly-roll major capsid proteins clarify the origins of an ancient virus kingdom.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
  10. A filamentous archaeal virus is enveloped inside the cell and released through pyramidal portals.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. ICTV Virus Taxonomy Profile:The Journal of general virology · 2021
    Article
  12. Review
  13. The LUCA and its complex virome.Nature reviews. Microbiology · 2020
    Review
  14. Structures of filamentous viruses infecting hyperthermophilic archaea explain DNA stabilization in extreme environments.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 4 countries.

Fengbin WangDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908.
Ying LiuDepartment of Microbiology, Institut Pasteur, 75015 Paris, France.
Zhangli SuDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908.
Tomasz OsinskiDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908.
Guilherme A P de OliveiraDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908.ORCID 0000-0002-0063-5888
James F ConwayDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213.ORCID 0000-0002-6581-4748
Stefan SchoutenRoyal Netherlands Institute for Sea Research, Texel 1790 AB, The Netherlands.
Mart KrupovicDepartment of Microbiology, Institut Pasteur, 75015 Paris, France.ORCID 0000-0001-5486-0098
David PrangishviliDepartment of Microbiology, Institut Pasteur, 75015 Paris, France; egelman@virginia.edu david.prangishvili@pasteur.fr.
Edward H EgelmanDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908; egelman@virginia.edu david.prangishvili@pasteur.fr.ORCID 0000-0003-4844-5212
University of Virginia · USInstitut Pasteur · FRTbilisi State University · GEUniversity of Pittsburgh · USUtrecht University · NL

Funding

Cryo-EM of Helical Protein and Nucleoprotein Polymers at Near Atomic ResolutionR35GM122510 · NIGMS · UNIVERSITY OF VIRGINIA · PI EDWARD H. EGELMAN · 2017 to 2026
$7.3M
NCI NIH HHS HHSN261200800001ENIGMS NIH HHS R35 GM122510
6 · The paper itself

Abstract

Studies on viruses infecting archaea living in the most extreme environments continue to show a remarkable diversity of structures, suggesting that the sampling continues to be very sparse. We have used electron cryo-microscopy to study at 3.7-Å resolution the structure of the

Indexed as

Virus AssemblyArchaeal VirusesCapsidCapsid ProteinsCryoelectron MicroscopyDNA, A-FormDNA, ViralDNA VirusesSulfolobusCapsid ProteinsDNA, A-FormDNA, Viralcryo-EMDNA structurehyperthermophilic acidophiles

Identifiers

PMID31636205
PMCPMC6842630
OpenAlexW2977348523

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.