Evidence map›Paper›PMID 31636125›Full record

ArticleThe Journal of biological chemistry2019

The Chd1 chromatin remodeler forms long-lived complexes with nucleosomes in the presence of ADP·BeF

Ren Ren, Samaneh Ghassabi Kondalaji, Gregory D Bowman

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Molecular Acrobats: How CHD Remodelers Shape the Genetic Playground to License Cell Identity.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  4. Cryo-EM structure of ALC1 in an open conformation bound to a PARylated nucleosome.Acta crystallographica. Section D, Structural biology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ren RenT. C. Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, Maryland 21218.
Samaneh Ghassabi KondalajiT. C. Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, Maryland 21218.
Gregory D BowmanT. C. Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, Maryland 21218. Electronic address: gdbowman@jhu.edu.
Johns Hopkins University · US

Funding

Structural and Functional Characterization of the Chd1 Chromatin RemodelerR01GM084192 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI BOWMAN, GREGORY DEAN · 2008 to 2024
$6.3M
Acquisition of a Carl Zeiss Lightsheet Z.1 Fluorescence MicroscopeS10OD020152 · OD · JOHNS HOPKINS UNIVERSITY · PI MCCAFFERY, J. MICHAEL · 2016 to 2016
$597k
Acquisition of GE Typhoon FLA9500 Variable Mode ImagerS10OD021567 · OD · JOHNS HOPKINS UNIVERSITY · PI MCCAFFERY, J. MICHAEL · 2017 to 2017
$147k
NIGMS NIH HHS R01 GM084192NIH HHS S10 OD020152NIH HHS S10 OD021567
6 · The paper itself

Abstract

Chromatin remodelers use helicase-like ATPase domains to reorganize histone-DNA contacts within the nucleosome. Like other remodelers, the chromodomain helicase DNA-binding protein 1 (Chd1) remodeler repositions nucleosomes by altering DNA topology at its internal binding site on the nucleosome, coupling different degrees of DNA twist and DNA movement to distinct nucleotide-bound states of the ATPase motor. In this work, we used a competition assay to study how variations in the bound nucleotide, Chd1, and the nucleosome substrate affect stability of Chd1-nucleosome complexes. We found that Chd1-nucleosome complexes formed in nucleotide-free or ADP conditions were relatively unstable and dissociated within 30 s, whereas those with the nonhydrolyzable ATP analog AMP-PNP had a mean lifetime of 4.8 ± 0.7 min. Chd1-nucleosome complexes were remarkably stable with ADP·BeF

Indexed as

Adenosine DiphosphateDNA-Binding ProteinsDNA, FungalFluoridesMagnesiumNucleosomesProtein DomainsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdenosine DiphosphateCHD1 protein, S cerevisiaeDNA-Binding ProteinsDNA, FungalFluoridesMagnesiumNucleosomesSaccharomyces cerevisiae ProteinsATPasechromatin remodelingchromodomain helicase DNA-binding protein 1 (Chd1)DNA binding proteinmotor proteinnucleoside/nucleotide analognucleosomesuperfamily 2 (SF2) ATPasetransition state analogtwist defect

Identifiers

PMID31636125
PMCPMC6885614
OpenAlexW2981861014

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.