Evidence map›Paper›PMID 31636101›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2020

Deep Learning Based on Standard H&E Images of Primary Melanoma Tumors Identifies Patients at Risk for Visceral Recurrence and Death.

Prathamesh M Kulkarni, Eric J Robinson, Jaya Sarin Pradhan, Robyn D Gartrell-Corrado, Bethany R Rohr, Megan H Trager, Larisa J Geskin, Harriet M Kluger, Pok Fai Wong, Balazs Acs and 12 more

Abstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed.

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  17. A review on federated learning in computational pathology.Computational and structural biotechnology journal · 2024
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2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Prathamesh M Kulkarni *Department of Psychiatry, School of Medicine, NYU School of Medicine, New York, New York.
Eric J Robinson *Department of Anesthesiology, Perioperative Care and Pain Medicine, NYU School of Medicine, New York, New York.ORCID 0000-0002-6334-3540
Jaya Sarin PradhanDepartment of Medicine, Columbia University Irving Medical Center, New York, New York.
Robyn D Gartrell-CorradoDepartment of Pediatrics, Columbia University Irving Medical Center, New York, New York.
Bethany R RohrDepartment of Pathology, Geisinger Health System, Danville, Pennsylvania.ORCID 0000-0003-1027-5203
Megan H TragerVagelos College of Physicians and Surgeons, Columbia University, New York, New York.ORCID 0000-0002-7330-1627
Larisa J GeskinDepartment of Dermatology, Columbia University Irving Medical Center, New York, New York.
Harriet M KlugerDepartment of Medicine, Yale School of Medicine, New Haven, Connecticut.
Pok Fai WongDepartment of Pathology, Yale School of Medicine, New Haven, Connecticut.
Balazs AcsDepartment of Pathology, Yale School of Medicine, New Haven, Connecticut.ORCID 0000-0002-0972-4633
Emanuelle M RizkDepartment of Medicine, Columbia University Irving Medical Center, New York, New York.
Chen YangDepartment of Medicine, Jiaotong University School of Medicine, Shanghai, China.
Manas MondalDepartment of Medicine, Columbia University Irving Medical Center, New York, New York.
Michael R MooreDepartment of Medicine, Columbia University Irving Medical Center, New York, New York.
Iman OsmanDepartments of Dermatology, Medicine, and Urology, NYU School of Medicine, New York, New York.
Robert PhelpsDepartments of Pathology and Dermatology, Icahn School of Medicine at Mount Sinai, New York, New York.
Basil A HorstDepartment of Pathology, University of British Columbia, Vancouver, Canada.
Zhe S ChenDepartment of Psychiatry, School of Medicine, NYU School of Medicine, New York, New York.ORCID 0000-0002-6483-6056
Tammie FerringerDepartment of Pediatrics, Columbia University Irving Medical Center, New York, New York.
David L RimmDepartment of Dermatology, Columbia University Irving Medical Center, New York, New York.
Jing Wang *Department of Anesthesiology, Perioperative Care and Pain Medicine, NYU School of Medicine, New York, New York. yms4@cumc.columbia.edu jing.wang2@nyulangone.org.
Yvonne M Saenger *Department of Medicine, Columbia University Irving Medical Center, New York, New York. yms4@cumc.columbia.edu jing.wang2@nyulangone.org.

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI DAVID L RIMM · 1985 to 2026
$85.0M
Yale SPORE in Lung Cancer (YSILC): The Biology and Personalized Treatment of Lung CancerP50CA196530 · NCI · YALE UNIVERSITY · PI Shuangge Ma · 2015 to 2026
$31.1M
Institutional Career Development CoreKL2TR001874 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GENKINGER, JEANINE M., SHIMBO, DAICHI · 2016 to 2025
$13.6M
Project 4P50CA225450 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI OSMAN, IMAN, WEBER, JEFFREY S · 2019 to 2025
$12.5M
Ph1 Study of T-Vec given endoscopically for advanced pancreatic cancer IN 17248 (11/21/2016)R01FD006108 · FDA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SAENGER, YVONNE MARGARET · 2018 to 2020
$750k
A prognostic mRNA immune signature for resected stage II-III melanomaUH2CA218149 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KROLEWSKI, JOHN J., SAENGER, YVONNE MARGARET · 2019 to 2020
$365k
FDA HHS R01 FD006108NCATS NIH HHS KL2 TR001874NCATS NIH HHS UL1 TR001863NCI NIH HHS P30 CA016359NCI NIH HHS P50 CA196530NCI NIH HHS P50 CA225450NCI NIH HHS UH2 CA218149
6 · The paper itself

Abstract

purposeBiomarkers for disease-specific survival (DSS) in early-stage melanoma are needed to select patients for adjuvant immunotherapy and accelerate clinical trial design. We present a pathology-based computational method using a deep neural network architecture for DSS prediction. EXPERIMENTAL

designThe model was trained on 108 patients from four institutions and tested on 104 patients from Yale School of Medicine (YSM, New Haven, CT). A receiver operating characteristic (ROC) curve was generated on the basis of vote aggregation of individual image sequences, an optimized cutoff was selected, and the computational model was tested on a third independent population of 51 patients from Geisinger Health Systems (GHS).

resultsArea under the curve (AUC) in the YSM patients was 0.905 (

conclusionsThe novel method presented is applicable to digital images, obviating the need for sample shipment and manipulation and representing a practical advance over current genetic and IHC-based methods.

Indexed as

AdultAgedAged, 80 and overAlgorithmsArea Under CurveBiopsyDeep LearningDisease ProgressionFemaleFollow-Up StudiesHumansImage Processing, Computer-AssistedMaleMelanomaMiddle AgedNeoplasm Recurrence, Local

Identifiers

PMID31636101
PMCPMC8142811

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.