Evidence map›Paper›PMID 31634430›Full record

ArticleACS chemical biology2020

Engineered Reader Proteins for Enhanced Detection of Methylated Lysine on Histones.

Katherine I Albanese, Mackenzie W Krone, Christopher J Petell, Madison M Parker, Brian D Strahl, Eric M Brustad, Marcey L Waters

Abstract read
In one paragraph

Article in ACS chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Contribution of Electrostatic CHJournal of the American Chemical Society · 2024
    Article
  9. Article
  10. Article
  11. Review
  12. Development and application of novel BiFC probes for cell sorting based on epigenetic modification.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2022
    Article
  13. Article
  14. Article
  15. Chemical biology approaches to study histone interactors.Biochemical Society transactions · 2021
    Review
  16. Interactions With Histone H3 & Tools to Study Them.Frontiers in cell and developmental biology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Katherine I AlbaneseDepartment of Chemistry , University of North Carolina at Chapel Hill , CB 3290, Chapel Hill , North Carolina 27599 , United States.ORCID 0000-0002-2336-1621
Mackenzie W KroneDepartment of Chemistry , University of North Carolina at Chapel Hill , CB 3290, Chapel Hill , North Carolina 27599 , United States.ORCID 0000-0002-8602-3742
Christopher J PetellDepartment of Biochemistry and Biophysics , University of North Carolina at Chapel Hill , 120 Mason Farm Rd , Chapel Hill , North Carolina 27599 , United States.ORCID 0000-0003-1239-3836
Madison M ParkerDepartment of Chemistry , University of North Carolina at Chapel Hill , CB 3290, Chapel Hill , North Carolina 27599 , United States.
Brian D StrahlDepartment of Biochemistry and Biophysics , University of North Carolina at Chapel Hill , 120 Mason Farm Rd , Chapel Hill , North Carolina 27599 , United States.ORCID 0000-0002-4947-6259
Eric M BrustadDepartment of Chemistry , University of North Carolina at Chapel Hill , CB 3290, Chapel Hill , North Carolina 27599 , United States.ORCID 0000-0002-7031-5433
Marcey L WatersDepartment of Chemistry , University of North Carolina at Chapel Hill , CB 3290, Chapel Hill , North Carolina 27599 , United States.ORCID 0000-0002-4917-5755

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI David Darr · 1985 to 2026
$201.5M
Integrated Training in Cancer Model SystemsT32CA009156 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DER, CHANNING J. · 1985 to 2020
$19.7M
Mechanisms of chromatin and transcriptional regulationR35GM126900 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Brian D Strahl · 2018 to 2026
$5.5M
Origins of Ligand Binding and Selectivity in Methyllysine Reader and Writer ProteinsR01GM118499 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WATERS, MARCEY L · 2017 to 2022
$1.6M
NCI NIH HHS P30 CA016086NCI NIH HHS T32 CA009156NIGMS NIH HHS R01 GM118499NIGMS NIH HHS R35 GM126900
6 · The paper itself

Abstract

Histone post-translational modifications (PTMs) are crucial for many cellular processes including mitosis, transcription, and DNA repair. The cellular readout of histone PTMs is dependent on both the chemical modification and histone site, and the array of histone PTMs on chromatin is dynamic throughout the eukaryotic life cycle. Accordingly, methods that report on the presence of PTMs are essential tools for resolving open questions about epigenetic processes and for developing therapeutic diagnostics. Reader domains that recognize histone PTMs have shown potential as advantageous substitutes for anti-PTM antibodies, and engineering efforts aimed at enhancing reader domain affinities would advance their efficacy as antibody alternatives. Here we describe engineered chromodomains from

Indexed as

Amino Acid SequenceAnimalsBinding SitesChromatinChromobox Protein Homolog 5Cloning, MolecularDrosophila melanogasterEpigenesis, GeneticGene Expression RegulationHistonesHumansLysineMethylationModels, MolecularMutationNucleosomesCBX1 protein, humanChromatinChromobox Protein Homolog 5HistonesLysineNucleosomesRecombinant Proteins

Identifiers

PMID31634430
PMCPMC7365037

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.