Evidence map›Paper›PMID 31634353›Full record

ArticlePLoS neglected tropical diseases2019

Erythritol as a single carbon source improves cultural isolation of Burkholderia pseudomallei from rice paddy soils.

Trung T Trinh, Karoline Assig, Quyen T L Tran, André Goehler, Linh N H Bui, Claudia Wiede, Bettina Folli, Sabine Lichtenegger, Tinh T Nguyen, Gabriel E Wagner and 2 more

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Microbiology resource announcements · 2026
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  6. Phylogenetic and phenotypic characterization ofFrontiers in microbiology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Trung T TrinhInstitute of Microbiology and Biotechnology, Vietnam National University, Hanoi, Vietnam.
Karoline AssigInstitute of Hygiene, Microbiology and Environmental Medicine, Medical University Graz, Graz, Austria.
Quyen T L TranInstitute of Microbiology and Biotechnology, Vietnam National University, Hanoi, Vietnam.
André GoehlerFriedrich Loeffler Institute of Medical Microbiology, University Medicine Greifswald, Greifswald, Germany.ORCID 0000-0002-4006-3511
Linh N H BuiInstitute of Microbiology and Biotechnology, Vietnam National University, Hanoi, Vietnam.
Claudia WiedeFriedrich Loeffler Institute of Medical Microbiology, University Medicine Greifswald, Greifswald, Germany.
Bettina FolliInstitute of Hygiene, Microbiology and Environmental Medicine, Medical University Graz, Graz, Austria.
Sabine LichteneggerInstitute of Hygiene, Microbiology and Environmental Medicine, Medical University Graz, Graz, Austria.
Tinh T NguyenInstitute of Microbiology and Biotechnology, Vietnam National University, Hanoi, Vietnam.
Gabriel E WagnerInstitute of Hygiene, Microbiology and Environmental Medicine, Medical University Graz, Graz, Austria.
Christian KohlerFriedrich Loeffler Institute of Medical Microbiology, University Medicine Greifswald, Greifswald, Germany.
Ivo SteinmetzInstitute of Hygiene, Microbiology and Environmental Medicine, Medical University Graz, Graz, Austria.ORCID 0000-0003-0510-7336

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIsolation of the soil bacterium Burkholderia pseudomallei from tropical environments is important to generate a global risk map for man and animals to acquire the infectious disease melioidosis. There is increasing evidence, that the currently recommended soil culture protocol using threonine-basal salt solution with colistin (TBSS-C50) for enrichment of B. pseudomallei and Ashdown agar for subsequent subculture lacks sensitivity. We therefore investigated, if the otherwise rarely encountered erythritol catabolism of B. pseudomallei might be exploited to improve isolation of this bacterium from soil. METHODOLOGY/PRINCIPAL

findingsBased on TBSS-C50, we designed a new colistin-containing medium with erythritol as the single carbon source (EM). This medium was validated in various culture protocols by analyzing 80 soil samples from 16 different rice fields in Vietnam. B. pseudomallei enrichment was determined in all culture supernatants by a specific quantitative PCR (qPCR) targeting the type three secretion system 1. 51 out of 80 (63.8%) soil samples gave a positive qPCR signal in at least one of the culture conditions. We observed a significantly higher enrichment shown by lower median cycle threshold values for B. pseudomallei in a two-step culture with TBSS-C50 for 48 h followed by EM for 96h compared to single cultures in TBSS-C50 for either 48h or 144h (p<0.0001, respectively). Accordingly, B. pseudomallei could be isolated on Ashdown agar in 58.8% (30/51) of samples after subcultures from our novel two-step enrichment culture compared to only 9.8% (5/51) after standard enrichment with TBSS-C50 for 48h (p<0.0001) or 25.5% (13/51; p<0.01) after TBSS-C50 for 144h. CONCLUSIONS/SIGNIFICANCE: In the present study, we show that specific exploitation of B. pseudomallei metabolic capabilities in enrichment protocols leads to a significantly improved isolation rate of this pathogen from soil compared to established standard procedures. Our new culture method might help to facilitate the creation of environmental risk maps for melioidosis in the future.

Indexed as

Soil MicrobiologyBacteriological TechniquesBurkholderia pseudomalleiCarbonCulture MediaErythritolMelioidosisOryzaSoilVietnamCarbonCulture MediaErythritolSoil

Identifiers

PMID31634353
PMCPMC6822774

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.