Evidence map›Paper›PMID 31634185›Full record

Observational studyAIDS (London, England)2020

Genetic clustering analysis for HIV infection among MSM in Nigeria: implications for intervention.

Yuruo Li, Hongjie Liu, Habib O Ramadhani, Nicaise Ndembi, Trevor A Crowell, Gustavo Kijak, Merlin L Robb, Julie A Ake, Afoke Kokogho, Rebecca G Nowak and 6 more

Open access · greenAbstract readMulticenter StudyObservational Study
In one paragraph

Observational study in AIDS (London, England), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. RFID Data Analysis and Evaluation Based on Big Data and Data Clustering.Computational intelligence and neuroscience · 2022
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 3 countries.

Yuruo LiDepartment of Epidemiology and Biostatistics, University of Maryland School of Public Health, College Park.
Hongjie LiuDepartment of Epidemiology and Biostatistics, University of Maryland School of Public Health, College Park.
Habib O RamadhaniInstitute of Human Virology, University of Maryland School of Medicine, Baltimore, Maryland, USA.
Nicaise NdembiInstitute of Human Virology, University of Maryland School of Medicine, Baltimore, Maryland, USA.
Trevor A CrowellUS Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring.
Gustavo KijakUS Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring.
Merlin L RobbUS Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring.
Julie A AkeUS Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring.
Afoke KokoghoHenry M. Jackson Foundation Medical Research International.
Rebecca G NowakInstitute of Human Virology, University of Maryland School of Medicine, Baltimore, Maryland, USA.
Charlotte GaydosJohns Hopkins University School of Medicine, Baltimore.
Stefan D BaralDepartment of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA.
Erik VolzDepartment of Infectious Disease Epidemiology, Imperial College, London, UK.
Sodsai TovanabutraUS Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring.
Man CharuratInstitute of Human Virology, University of Maryland School of Medicine, Baltimore, Maryland, USA.
TRUST/RV368 Study Group
University of Maryland, Baltimore · USHenry M. Jackson Foundation · USWalter Reed Army Institute of Research · USJohns Hopkins University · USUniversity of Maryland, College Park · USImperial College London · GB

Funding

Validation of Stigma Metrics for Marginalized Men R01MH110358 · NIMH · JOHNS HOPKINS UNIVERSITY · PI BARAL, STEFAN DAVID · 2017 to 2021
$3.6M
Building TRUSTR01AI120913 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI CHARURAT, MANHATTAN E · 2015 to 2019
$3.3M
TRUSTR01MH099001 · NIMH · UNIVERSITY OF MARYLAND BALTIMORE · PI CHARURAT, MANHATTAN E · 2012 to 2014
$2.9M
Epidemiology Research Training for Public Health Impact in Nigeria (Epi-Nigeria)D43TW010051 · FIC · UNIVERSITY OF MARYLAND BALTIMORE · PI ABIMIKU, ALASH'LE G., CHARURAT, MANHATTAN E · 2016 to 2020
$1.5M
Role of anal microbiota, local cytokines and HIV in persistence of high-risk human papillomavirusK07CA225403 · NCI · UNIVERSITY OF MARYLAND BALTIMORE · PI NOWAK, REBECCA G. · 2018 to 2022
$677k
FIC NIH HHS D43 TW010051Medical Research Council MR/R015600/1NCI NIH HHS K07 CA225403NIAID NIH HHS R01 AI120913NIMH NIH HHS R01 MH099001NIMH NIH HHS R01 MH110358PEPFAR
6 · The paper itself

Abstract

backgroundThe HIV epidemic continues to grow among MSM in countries across sub-Saharan Africa including Nigeria. To inform prevention efforts, we used a phylogenetic cluster method to characterize HIV genetic clusters and factors associated with cluster formation among MSM living with HIV in Nigeria.

methodsWe analyzed HIV-1 pol sequences from 417 MSM living with HIV enrolled in the TRUST/RV368 cohort between 2013 and 2017 in Abuja and Lagos, Nigeria. A genetically linked cluster was defined among participants whose sequences had pairwise genetic distance of 1.5% or less. Binary and multinomial logistic regressions were used to estimate adjusted odds ratios (AORs) and 95% confidence intervals (CIs) for factors associated with HIV genetic cluster membership and size.

resultsAmong 417 MSM living with HIV, 153 (36.7%) were genetically linked. Participants with higher viral load (AOR = 1.72 95% CI: 1.04-2.86), no female partners (AOR = 3.66; 95% CI: 1.97-6.08), and self-identified as male sex (compared with self-identified as bigender) (AOR = 3.42; 95% CI: 1.08-10.78) had higher odds of being in a genetic cluster. Compared with unlinked participants, MSM who had high school education (AOR = 23.84; 95% CI: 2.66-213.49), were employed (AOR = 3.41; 95% CI: 1.89-10.70), had bacterial sexually transmitted infections (AOR = 3.98; 95% CI: 0.89-17.22) and were not taking antiretroviral therapy (AOR = 6.61; 95% CI: 2.25-19.37) had higher odds of being in a large cluster (size > 4).

conclusionComprehensive HIV prevention packages should include behavioral and biological components, including early diagnosis and treatment of both HIV and bacterial sexually transmitted infections to optimally reduce the risk of HIV transmission and acquisition.

Indexed as

AdolescentAdultAnti-Retroviral AgentsCluster AnalysisGenetic Predisposition to DiseaseHIV InfectionsHomosexuality, MaleHumansLogistic ModelsMaleMultivariate AnalysisNigeriaProspective StudiesYoung AdultAnti-Retroviral Agents

Identifiers

PMID31634185
PMCPMC7219556
OpenAlexW2980427522

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.