Evidence map›Paper›PMID 31633931›Full record

ArticleBiochemistry2019

Phosphorylation of Histone Deacetylase 8: Structural and Mechanistic Analysis of the Phosphomimetic S39E Mutant.

Katherine R Welker Leng, Carol Ann Castañeda, Christophe Decroos, Barira Islam, Shozeb M Haider, David W Christianson, Carol A Fierke

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Intrinsic structural dynamics dictate enzymatic activity and inhibition.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  4. Article
  5. Review
  6. Article
  7. Structure-Based Inhibitor Discovery of Class I Histone Deacetylases (HDACs).International journal of molecular sciences · 2020
    Review
  8. Critical review of non-histone human substrates of metal-dependent lysine deacetylases.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Katherine R Welker LengDepartment of Chemistry , University of Michigan , 930 North University Avenue , Ann Arbor , Michigan 48109 , United States.ORCID 0000-0001-6021-5159
Carol Ann CastañedaInterdepartmental Program in Chemical Biology , University of Michigan , 210 Washtenaw Avenue, 4008 Life Sciences Institute , Ann Arbor , Michigan 48109 , United States.ORCID 0000-0002-1233-4062
Christophe DecroosDepartment of Chemistry , University of Pennsylvania , 231 South 34th Street , Philadelphia , Pennsylvania 19104 , United States.ORCID 0000-0002-2610-3484
Barira IslamSchool of Pharmacy , University College London , 29-39 Brunswick Square , London WC1N 1AX , U.K.
Shozeb M HaiderSchool of Pharmacy , University College London , 29-39 Brunswick Square , London WC1N 1AX , U.K.ORCID 0000-0003-2650-2925
David W ChristiansonDepartment of Chemistry , University of Pennsylvania , 231 South 34th Street , Philadelphia , Pennsylvania 19104 , United States.ORCID 0000-0002-0194-5212
Carol A FierkeDepartment of Chemistry , University of Michigan , 930 North University Avenue , Ann Arbor , Michigan 48109 , United States.ORCID 0000-0002-1481-0579
Medway School of Pharmacy · GBUniversity of Michigan · USUniversity of Pennsylvania · USWilliams (United States) · US

Funding

Cellular Biotechnology Training Program (CBTP)T32GM008353 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SCHWENDEMAN, ANNA · 1991 to 2021
$9.3M
Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Structure and Function of MetalloenzymesR01GM049758 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI CHRISTIANSON, DAVID W · 1994 to 2025
$7.6M
STRUCTURE/FUNCTION OF ZINC METALLOPROTEINSR01GM040602 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FIERKE, CAROL A · 1993 to 2017
$6.0M
MICHIGAN CHEMISTRY-BIOLOGY INTERFACE TRAINING PROGRAMT32GM008597 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MONTGOMERY, JOHN · 1996 to 2018
$5.0M
Cellular Biotechnology Training Program (CBTP) - Years 31-35T32GM145304 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Guizhi Zhu · 2022 to 2026
$2.6M
NIBIB NIH HHS P30 EB009998NIGMS NIH HHS R01 GM040602NIGMS NIH HHS R01 GM049758NIGMS NIH HHS T32 GM008353NIGMS NIH HHS T32 GM008597NIGMS NIH HHS T32 GM145304
6 · The paper itself

Abstract

Histone deacetylase (HDAC) enzymes that catalyze removal of acetyl-lysine post-translational modifications are frequently post-translationally modified. HDAC8 is phosphorylated within the deacetylase domain at conserved residue serine 39, which leads to decreased catalytic activity. HDAC8 phosphorylation at S39 is unique in its location and function and may represent a novel mode of deacetylation regulation. To better understand the impact of phosphorylation of HDAC8 on enzyme structure and function, we performed crystallographic, kinetic, and molecular dynamics studies of the S39E HDAC8 phosphomimetic mutant. This mutation decreases the level of deacetylation of peptides derived from acetylated nuclear and cytoplasmic proteins. However, the magnitude of the effect depends on the peptide sequence and the identity of the active site metal ion [Zn(II) vs Fe(II)], with the value of

Indexed as

Crystallography, X-RayHistone DeacetylasesHumansMolecular Dynamics SimulationPhosphorylationPoint MutationProtein ConformationRepressor ProteinsSubstrate SpecificityHDAC8 protein, humanHistone DeacetylasesRepressor Proteins

Identifiers

PMID31633931
PMCPMC6903415
OpenAlexW2982246767

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.