Evidence map›Paper›PMID 31633690›Full record

ArticleJournal of visualized experiments : JoVE2019

Lentiviral CRISPR/Cas9-Mediated Genome Editing for the Study of Hematopoietic Cells in Disease Models.

Soichi Sano, Ying Wang, Megan A Evans, Yoshimitsu Yura, Miho Sano, Hayato Ogawa, Keita Horitani, Heather Doviak, Kenneth Walsh

Open access · greenAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 14 citations in OpenAlex.

  1. Disruption of theNature cardiovascular research · 2024
    Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Importance of clonal hematopoiesis in heart failure.Trends in cardiovascular medicine · 2022
    Review
  10. Review
  11. Article
  12. Employing the CRISPR-Cas System for Clonal Hematopoiesis Research.International journal of physical medicine & rehabilitation · 2021
    Article
  13. Review
  14. JACC. Basic to translational science · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Soichi SanoHematovascular Biology Center, Robert M. Berne Cardiovascular Research Center, University of Virginia School of Medicine.
Ying WangHematovascular Biology Center, Robert M. Berne Cardiovascular Research Center, University of Virginia School of Medicine.
Megan A EvansHematovascular Biology Center, Robert M. Berne Cardiovascular Research Center, University of Virginia School of Medicine.
Yoshimitsu YuraHematovascular Biology Center, Robert M. Berne Cardiovascular Research Center, University of Virginia School of Medicine.
Miho SanoHematovascular Biology Center, Robert M. Berne Cardiovascular Research Center, University of Virginia School of Medicine.
Hayato OgawaHematovascular Biology Center, Robert M. Berne Cardiovascular Research Center, University of Virginia School of Medicine.
Keita HoritaniHematovascular Biology Center, Robert M. Berne Cardiovascular Research Center, University of Virginia School of Medicine.
Heather DoviakHematovascular Biology Center, Robert M. Berne Cardiovascular Research Center, University of Virginia School of Medicine.
Kenneth WalshHematovascular Biology Center, Robert M. Berne Cardiovascular Research Center, University of Virginia School of Medicine; kw9ar@virginia.edu.
University of Virginia · US

Funding

Mosaic loss of Y chromosome in blood and heart failureR01AG073249 · NIA · UNIVERSITY OF VIRGINIA · PI WALSH, KENNETH · 2021 to 2025
$2.6M
Somatic TET2 mutations in cardiac remodelingR01HL138014 · NHLBI · UNIVERSITY OF VIRGINIA · PI WALSH, KENNETH · 2017 to 2020
$2.6M
Clonal hematopoiesis and accelerated metabolic dysfunction in obesityR01HL139819 · NHLBI · UNIVERSITY OF VIRGINIA · PI WALSH, KENNETH · 2019 to 2022
$2.1M
Hematopoietic stem cell mutations and ischemic cardio-metabolic diseaseR01HL141256 · NHLBI · UNIVERSITY OF VIRGINIA · PI WALSH, KENNETH · 2019 to 2022
$1.9M
NHLBI NIH HHS R01 HL138014NHLBI NIH HHS R01 HL139819NHLBI NIH HHS R01 HL141256NIA NIH HHS R01 AG073249
6 · The paper itself

Abstract

Manipulating genes in hematopoietic stem cells using conventional transgenesis approaches can be time-consuming, expensive, and challenging. Benefiting from advances in genome editing technology and lentivirus-mediated transgene delivery systems, an efficient and economical method is described here that establishes mice in which genes are manipulated specifically in hematopoietic stem cells. Lentiviruses are used to transduce Cas9-expressing lineage-negative bone marrow cells with a guide RNA (gRNA) targeting specific genes and a red fluorescence reporter gene (RFP), then these cells are transplanted into lethally-irradiated C57BL/6 mice. Mice transplanted with lentivirus expressing non-targeting gRNA are used as controls. Engraftment of transduced hematopoietic stem cells are evaluated by flow cytometric analysis of RFP-positive leukocytes of peripheral blood. Using this method, ~90% transduction of myeloid cells and ~70% of lymphoid cells at 4 weeks after transplantation can be achieved. Genomic DNA is isolated from RFP-positive blood cells, and portions of the targeted site DNA are amplified by PCR to validate the genome editing. This protocol provides a high-throughput evaluation of hematopoiesis-regulatory genes and can be extended to a variety of mouse disease models with hematopoietic cell involvement.

Indexed as

Gene EditingAnimalsBase SequenceBone MarrowBone Marrow CellsCell LineageCRISPR-Associated Protein 9CRISPR-Cas SystemsDisease Models, AnimalHematopoietic Stem CellsLentivirusMaleMice, Inbred C57BLPolyethyleneimineRNA, Guide, CRISPR-Cas SystemsCRISPR-Associated Protein 9PolyethyleneimineRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID31633690
PMCPMC7249700
OpenAlexW2978300467

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.