Evidence map›Paper›PMID 31631649›Full record

ArticleBiochemistry2019

Large-Scale Photolithographic Synthesis of Chimeric DNA/RNA Hairpin Microarrays To Explore Sequence Specificity Landscapes of RNase HII Cleavage.

Jory Lietard, Masad J Damha, Mark M Somoza

Open access · hybridAbstract read
In one paragraph

Article in Biochemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Jory LietardInstitute of Inorganic Chemistry, Faculty of Chemistry , University of Vienna , Althanstraße 14 (UZA II) , 1090 Vienna , Austria.ORCID 0000-0003-4523-6001
Masad J DamhaDepartment of Chemistry , McGill University , 801 Rue Sherbrooke Ouest , Montreal , QC H3A 0B8 , Canada.ORCID 0000-0002-4458-1623
Mark M SomozaInstitute of Inorganic Chemistry, Faculty of Chemistry , University of Vienna , Althanstraße 14 (UZA II) , 1090 Vienna , Austria.ORCID 0000-0002-8039-1341
University of Vienna · ATMcGill University · CA

Funding

Austrian Science Fund FWF P 23797Austrian Science Fund FWF P 30596
6 · The paper itself

Abstract

Ribonuclease HII (RNase HII) is an essential endoribonuclease that binds to double-stranded DNA with RNA nucleotide incorporations and cleaves 5' of the ribonucleotide at RNA-DNA junctions. Thought to be present in all domains of life, RNase HII protects genomic integrity by initiating excision repair pathways that protect the encoded information from rapid degradation. There is sparse evidence that the enzyme cleaves some substrates better than others, but a large-scale study is missing. Such large-scale studies can be carried out on microarrays, and we employ chemical photolithography to synthesize very large combinatorial libraries of fluorescently labeled DNA/RNA chimeric sequences that self-anneal to form hairpin structures that are substrates for

Indexed as

DNAEscherichia coliGene LibraryHydrolysisInverted Repeat SequencesMicroarray AnalysisRibonuclease HRNASubstrate SpecificityDNARibonuclease Hribonuclease HIIRNA

Identifiers

PMID31631649
PMCPMC6838787
OpenAlexW2980391494

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.