Evidence map›Paper›PMID 31630790›Full record

ArticleAmerican journal of human genetics2019

Bi-allelic Pathogenic Variants in TUBGCP2 Cause Microcephaly and Lissencephaly Spectrum Disorders.

Tadahiro Mitani, Jaya Punetha, Ibrahim Akalin, Davut Pehlivan, Mateusz Dawidziuk, Zeynep Coban Akdemir, Sarenur Yilmaz, Ezgi Aslan, Jill V Hunter, Hadia Hijazi and 27 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 35 citations in OpenAlex.

  1. Genotypic and phenotypic heterogeneity in tubulinopathies: insights from a Turkish multicenter cohort.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2026
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  4. Expanding the Clinical and Molecular Spectrum ofmedRxiv : the preprint server for health sciences · 2025
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  13. Bi-Allelic c.1746G>T; p.Leu582= Variants inMolecular syndromology · 2022
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  16. Risk of sudden cardiac death in EXOSC5-related disease.American journal of medical genetics. Part A · 2021
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors at 13 institutions in 7 countries.

Tadahiro MitaniDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA. Electronic address: tadahiro.mitani@bcm.edu.
Jaya PunethaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Present address: Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Ibrahim AkalinDepartment of Medical Genetics, Istanbul Medeniyet University, Faculty of Medicine, Istanbul, 34720, Turkey.
Davut PehlivanDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Section of Neurology, Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA.
Mateusz DawidziukDepartment of Medical Genetics, Institute of Mother and Child, Warsaw, 01-211, Poland.
Zeynep Coban AkdemirDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Sarenur YilmazDepartment of Medical Genetics, Istanbul Medeniyet University, Faculty of Medicine, Istanbul, 34720, Turkey.
Ezgi AslanIstanbul Medeniyet University, Faculty of Medicine, Istanbul, 34720, Turkey.
Jill V HunterDepartment of Radiology, Baylor College of Medicine, Houston, TX 77030, USA.
Hadia HijaziDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Christopher M GrochowskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Shalini N JhangianiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, 77030, USA.
Ender KaracaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Present address: Department of Genetics, University of Alabama at Birmingham, Birmingham, AL 35294-0024, USA.
Jawid M FatihDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Piotr IwanowskiDepartment of Medical Genetics, Children's Memorial Health Institute, Warsaw, 04-730, Poland.
Tomasz GambinDepartment of Medical Genetics, Institute of Mother and Child, Warsaw, 01-211, Poland; Institute of Computer Science, Warsaw University of Technology, Warsaw, 00-661, -SA'>04-730, Poland.
Pawel WlasienkoDepartment of Medical Genetics, Institute of Mother and Child, Warsaw, 01-211, Poland.
Alicja Goszczanska-CiuchtaClinic of Neurology of Children and Adolescents, Institute of Mother and Child, Warsaw, 01-211, Poland.
Monika Bekiesinska-FigatowskaDepartment of Diagnostic Imaging, Institute of Mother and Child, Warsaw, 01-211, Poland.
Masoumeh HosseiniGenetics Research Center, University of Social Welfare and Rehabilitation Sciences, Tehran, 19857, Iran.
Sanaz ArzhangiGenetics Research Center, University of Social Welfare and Rehabilitation Sciences, Tehran, 19857, Iran.
Hossein NajmabadiGenetics Research Center, University of Social Welfare and Rehabilitation Sciences, Tehran, 19857, Iran.
Jill A RosenfeldDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Haowei DuDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Dana MarafiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Department of Pediatrics, Faculty of Medicine, Kuwait University, P.O. Box 24923, 13110 Safat, Kuwait.
Susan BlaserDepartment of Diagnostic Imaging, Division of Pediatric Neuroradiology, The Hospital for Sick Children, University of Toronto, Toronto, ON M5G 1X8, Canada.
Ronni TeitelbaumThe Prenatal Diagnosis and Medical Genetics Program, Department of Obstetrics and Gynecology, Mount Sinai Hospital, University of Toronto, Toronto, Ontario M5G 1Z5, Canada.
Rachel SilverThe Prenatal Diagnosis and Medical Genetics Program, Department of Obstetrics and Gynecology, Mount Sinai Hospital, University of Toronto, Toronto, Ontario M5G 1Z5, Canada.
Baylor-Hopkins Center for Mendelian Genomics
Jennifer E PoseyDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Hans-Hilger RopersInstitute for Human Genetics, University Medicine Mainz, Mainz, 55131, Germany.
Richard A GibbsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, 77030, USA.
Wojciech WiszniewskiDepartment of Medical Genetics, Institute of Mother and Child, Warsaw, 01-211, Poland; Department of Molecular and Medical Genetics, Oregon Health and Sciences University, Portland, OR 97239, USA.
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, 77030, USA; Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA.
David ChitayatThe Prenatal Diagnosis and Medical Genetics Program, Department of Obstetrics and Gynecology, Mount Sinai Hospital, University of Toronto, Toronto, Ontario M5G 1Z5, Canada; Division of Clinical and Metabolic Genetics, Department of Pediatrics, The Hospital for Sick Children, University of Toronto, Toronto, ON M5G 1X8, Canada.
Kimia KahriziGenetics Research Center, University of Social Welfare and Rehabilitation Sciences, Tehran, 19857, Iran.
Pawel GawlinskiDepartment of Medical Genetics, Institute of Mother and Child, Warsaw, 01-211, Poland. Electronic address: pawel.gawlinski@imid.med.pl.
Baylor College of Medicine · USUniversity of Social Welfare and Rehabilitation Sciences · IRIstanbul Medeniyet University · TRSickKids Foundation · CAChildren's Memorial Health Institute · PLIcahn School of Medicine at Mount Sinai · USInstitute of Computer Science · PLJohannes Gutenberg University Mainz · DEMount Sinai Hospital · CAOregon Health & Science University · USTexas Children's Hospital · USUniversity of Alabama at Birmingham · USUniversity of Toronto · CA

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
MEDICAL GENETICS RESEARCH FELLOWSHIP PROGRAMT32GM007526 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI Brendan Lee · 1985 to 2026
$11.4M
STRUCTURAL VARIATION IN NEUROLOGICAL DISEASER35NS105078 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2018 to 2025
$6.0M
Mutidisciplinary Training;Brain Disorders &DevelopmentT32NS043124 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI SWANN, JOHN WILLIAM · 2002 to 2021
$4.6M
Individual genomic analyses to discover the molecular basis and mechanisms contributing to adult-onset diseaseK08HG008986 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI POSEY, JENNIFER ELLEN · 2017 to 2021
$831k
NHGRI NIH HHS K08 HG008986NHGRI NIH HHS U54 HG003273NHGRI NIH HHS UM1 HG006542NIGMS NIH HHS T32 GM007526NINDS NIH HHS R35 NS105078NINDS NIH HHS T32 NS043124
6 · The paper itself

Abstract

Lissencephaly comprises a spectrum of malformations of cortical development. This spectrum includes agyria, pachygyria, and subcortical band heterotopia; each represents anatomical malformations of brain cortical development caused by neuronal migration defects. The molecular etiologies of neuronal migration anomalies are highly enriched for genes encoding microtubules and microtubule-associated proteins, and this enrichment highlights the critical role for these genes in cortical growth and gyrification. Using exome sequencing and family based rare variant analyses, we identified a homozygous variant (c.997C>T [p.Arg333Cys]) in TUBGCP2, encoding gamma-tubulin complex protein 2 (GCP2), in two individuals from a consanguineous family; both individuals presented with microcephaly and developmental delay. GCP2 forms the multiprotein γ-tubulin ring complex (γ-TuRC) together with γ-tubulin and other GCPs to regulate the assembly of microtubules. By querying clinical exome sequencing cases and through GeneMatcher-facilitated collaborations, we found three additional families with bi-allelic variation and similarly affected phenotypes including a homozygous variant (c.1843G>C [p.Ala615Pro]) in two families and compound heterozygous variants consisting of one missense variant (c.889C>T [p.Arg297Cys]) and one splice variant (c.2025-2A>G) in another family. Brain imaging from all five affected individuals revealed varying degrees of cortical malformations including pachygyria and subcortical band heterotopia, presumably caused by disruption of neuronal migration. Our data demonstrate that pathogenic variants in TUBGCP2 cause an autosomal recessive neurodevelopmental trait consisting of a neuronal migration disorder, and our data implicate GCP2 as a core component of γ-TuRC in neuronal migrating cells.

Indexed as

AllelesBrainCell MovementChildExomeFemaleGenetic VariationHomozygoteHumansLissencephalyMaleMicrocephalyMicrotubule-Associated ProteinsMicrotubulesNervous System MalformationsNeuronsMicrotubule-Associated ProteinsTUBGCP2 protein, humanTubulincortical malformationGCP2Lissencephalymultilocus pathogenic variationTUBGCP2γ-TuRC

Identifiers

PMID31630790
PMCPMC6848995
OpenAlexW2980969707

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.