Evidence map›Paper›PMID 31630789›Full record

ArticleAmerican journal of human genetics2019

RPL13 Variants Cause Spondyloepimetaphyseal Dysplasia with Severe Short Stature.

Cedric Le Caignec, Benjamin Ory, François Lamoureux, Marie-Francoise O'Donohue, Emilien Orgebin, Pierre Lindenbaum, Stéphane Téletchéa, Manon Saby, Anna Hurst, Katherine Nelson and 24 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  10. Coaching ribosome biogenesis from the nuclear periphery.bioRxiv : the preprint server for biology · 2024
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  15. Copy Number Variation and Osteoporosis.Current osteoporosis reports · 2023
    Review
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  18. Novel RPL13 Variants and Variable Clinical Expressivity in a Human Ribosomopathy With Spondyloepimetaphyseal Dysplasia.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2021
    Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 9 institutions in 4 countries.

Cedric Le CaignecCHU Nantes, Service de génétique médicale, F-44000 Nantes, France.
Benjamin OryNantes Université, INSERM, Bone sarcomas and remodeling of calcified tissues, UMR 1238, F-44000 Nantes, France.
François LamoureuxNantes Université, INSERM, Bone sarcomas and remodeling of calcified tissues, UMR 1238, F-44000 Nantes, France.
Marie-Francoise O'DonohueLaboratoire de Biologie Moléculaire Eucaryote, Centre de Biologie Intégrative (CBI), Université de Toulouse, UPS, CNRS, 31062 Toulouse, France.
Emilien OrgebinNantes Université, INSERM, Bone sarcomas and remodeling of calcified tissues, UMR 1238, F-44000 Nantes, France.
Pierre LindenbaumL'institut du thorax, INSERM, CNRS, Université de Nantes, F-44000 Nantes, France.
Stéphane TéletchéaNantes Université, CNRS, Unité Fonctionnalité et Ingénierie des Protéines (UFIP), UMR CNRS 6286, F-44000 Nantes, France.
Manon SabyINSERM U1149/ERL 8252, Inflammation Research Center, 75018 Paris, France.
Anna HurstDepartment of Genetics, University of Alabama at Birmingham, Birmingham, AL 35233, USA.
Katherine NelsonDepartment of Genetics, University of Alabama at Birmingham, Birmingham, AL 35233, USA.
Shawn R GilbertChildren's of Alabama, Department of Orthopaedic Surgery, University of Alabama at Birmingham, Birmingham, AL 35233, USA.
Yael WilnaiGenetic Institute, Tel Aviv Sourasky Medical Center, Tel Aviv 6423906, Israel.
Leonid ZeitlinPediatric Orthopedic Department, Dana-Dwek Children's Hospital, Tel Aviv Sourasky Medical Center, Tel Aviv 6423906, Israel.
Eitan SegevPediatric Orthopedic Department, Dana-Dwek Children's Hospital, Tel Aviv Sourasky Medical Center, Tel Aviv 6423906, Israel.
Robel TesfayeNantes Université, INSERM, Bone sarcomas and remodeling of calcified tissues, UMR 1238, F-44000 Nantes, France.
Mathilde NizonCHU Nantes, Service de génétique médicale, F-44000 Nantes, France.
Benjamin CogneCHU Nantes, Service de génétique médicale, F-44000 Nantes, France.
Stéphane BezieauCHU Nantes, Service de génétique médicale, F-44000 Nantes, France.
Loic GeoffroyService d'Orthopédie Pédiatrique, CHU de Nantes, F-44000 Nantes, France.
Antoine HamelService d'Orthopédie Pédiatrique, CHU de Nantes, F-44000 Nantes, France.
Emmanuelle MayrargueService d'Orthopédie Pédiatrique, CHU de Nantes, F-44000 Nantes, France.
Benoît de CourtivronService de Chirurgie Orthopédique Pédiatrique, CHU de Tours, 37044 Tours, France.
Aliette Decock-GiraudaudCRB/Tumorothèque, CHU de Tours, 37044 Tours, France.
Céline CharrierNantes Université, INSERM, Bone sarcomas and remodeling of calcified tissues, UMR 1238, F-44000 Nantes, France.
Olivier PichonCHU Nantes, Service de génétique médicale, F-44000 Nantes, France.
Christelle RetièreEtablissement Français du Sang, F-44000 Nantes, France; CRCINA, INSERM, CNRS, Université d'Angers, Université de Nantes, F-44000 Nantes, France.
Richard RedonL'institut du thorax, INSERM, CNRS, Université de Nantes, F-44000 Nantes, France.
Alexander PeplerCenter for Genomics and Transcriptomics and Praxis für Humangenetik Tübingen, 72076 Tübingen, Germany.
Kirsty McWalterGeneDx, Gaithersburg, MD 20877, USA.
Lydie Da CostaINSERM U1149/ERL 8252, Inflammation Research Center, 75018 Paris, France; AP-HP, Service d'Hématologie Biologique, Hôpital R. Debré, Université Paris 7 Denis Diderot, Sorbonne Paris Cité, 75019 Paris, France.
Annick ToutainService de Génétique, CHU de Tours, 37044 Tours, France.
Pierre-Emmanuel GleizesLaboratoire de Biologie Moléculaire Eucaryote, Centre de Biologie Intégrative (CBI), Université de Toulouse, UPS, CNRS, 31062 Toulouse, France.
Marc Baud'huinNantes Université, CHU Nantes, INSERM, Bone sarcomas and remodeling of calcified tissues, UMR 1238, F-44000 Nantes, France. Electronic address: marc.baudhuin@univ-nantes.fr.
Bertrand IsidorCHU Nantes, Service de génétique médicale, F-44000 Nantes, France. Electronic address: bertrand.isidor@chu-nantes.fr.
Inserm · FRCentre National de la Recherche Scientifique · FRGénétique Médicale & Génomique Fonctionelle · FRCentre Hospitalier Universitaire de Nantes · FRCentre Hospitalier Universitaire de Tours · FRTel Aviv Sourasky Medical Center · ILUniversity of Alabama at Birmingham · USChildren's of Alabama · USPraxis für Humangenetik Tübingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Variants in genes encoding ribosomal proteins have thus far been associated with Diamond-Blackfan anemia, a rare inherited bone marrow failure, and isolated congenital asplenia. Here, we report one de novo missense variant and three de novo splice variants in RPL13, which encodes ribosomal protein RPL13 (also called eL13), in four unrelated individuals with a rare bone dysplasia causing severe short stature. The three splice variants (c.477+1G>T, c.477+1G>A, and c.477+2 T>C) result in partial intron retention, which leads to an 18-amino acid insertion. In contrast to observations from Diamond-Blackfan anemia, we detected no evidence of significant pre-rRNA processing disturbance in cells derived from two affected individuals. Consistently, we showed that the insertion-containing protein is stably expressed and incorporated into 60S subunits similar to the wild-type protein. Erythroid proliferation in culture and ribosome profile on sucrose gradient are modified, suggesting a change in translation dynamics. We also provide evidence that RPL13 is present at high levels in chondrocytes and osteoblasts in mouse growth plates. Taken together, we show that the identified RPL13 variants cause a human ribosomopathy defined by a rare skeletal dysplasia, and we highlight the role of this ribosomal protein in bone development.

Indexed as

Anemia, Diamond-BlackfanAnimalsBone Diseases, DevelopmentalDwarfismHumansMaleMiceMice, Inbred C57BLMutation, MissenseNeoplasm ProteinsRibosomal ProteinsNeoplasm ProteinsRibosomal ProteinsRPL13 protein, humanbone dysplasiachondrodysplasiaribosomeRPL13short statureSpondyloepimetaphyseal dysplasia

Identifiers

PMID31630789
PMCPMC6849359
OpenAlexW2980434314

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.