Evidence map›Paper›PMID 31630310›Full record

ArticleTropical animal health and production2020

PRNP gene polymorphisms in main indigenous Turkish goat breeds.

Iraz Akis, Kemal Oztabak, Gizem Atmaca, Feraye Esen Gursel, Atila Ates, Hasret Yardibi, Sema Gurgoze, M Hanifi Durak, Ibrahim Erez, Cemal Un

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Article in Tropical animal health and production, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Genetic Variation in the Prion Protein Gene (Animals : an open access journal from MDPI · 2021
    Article
  4. Animals : an open access journal from MDPI · 2021
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Iraz AkisDepartment of Biochemistry, Faculty of Veterinary Medicine, Istanbul University-Cerrahpasa, Istanbul, Turkey. iraz@istanbul.edu.tr.ORCID https://orcid.org/0000-0001-7330-103X
Kemal OztabakDepartment of Biochemistry, Faculty of Veterinary Medicine, Istanbul University-Cerrahpasa, Istanbul, Turkey.
Gizem AtmacaDepartment of Biochemistry, Faculty of Veterinary Medicine, Istanbul University-Cerrahpasa, Istanbul, Turkey.
Feraye Esen GurselDepartment of Biochemistry, Faculty of Veterinary Medicine, Istanbul University-Cerrahpasa, Istanbul, Turkey.
Atila AtesDepartment of Biochemistry, Faculty of Veterinary Medicine, Istanbul University-Cerrahpasa, Istanbul, Turkey.
Hasret YardibiDepartment of Biochemistry, Faculty of Veterinary Medicine, Istanbul University-Cerrahpasa, Istanbul, Turkey.
Sema GurgozeDepartment of Biochemistry, Faculty of Veterinary Medicine, Dicle University, Diyarbakir, Turkey.
M Hanifi DurakDepartment of Biochemistry, Faculty of Veterinary Medicine, Dicle University, Diyarbakir, Turkey.
Ibrahim ErezDepartment of Zootechnics, Faculty of Agriculture, Cukurova University, Adana, Turkey.
Cemal UnDepartment of Biology, Faculty of Science, Ege University, Izmir, Turkey.
Istanbul University-Cerrahpaşa · TRDicle University · TRCukurova University · TREge University · TR

Funding

Bilimsel Araştirma Projeleri Birimi, Istanbul Üniversitesi TSA-2017-24414
6 · The paper itself

Abstract

The polymorphisms of the PRNP gene influence the susceptibility to scrapie in goats. In this study, caprine PRNP gene was analysed in a total of 249 individuals from three main indigenous goat breeds of Turkey: Anatolian Black, Angora and Kilis. We focused on the Anatolian Black breed, which represents 97% of the goat population in Turkey and compared the data of samples originated from different geographical regions. Eight polymorphisms were determined, given rise to 12 haplotypes. Allele, genotype and haplotype frequencies of the polymorphisms at codons 142, 143, 146, 154, 171, 211, 222 and 240 were calculated. Alleles associated to resistance to scrapie were found to be relatively rare in all breeds. The resistance allele 222K was absent in Turkish breeds. Other resistance-associated alleles: 146D, 146S, 154H and 171R were observed with low frequencies. The results of this study, which cover the mainly bred indigenous goats in Turkey, present the distribution of PRNP polymorphisms. Very low frequencies of resistance-associated alleles show the susceptibility to scrapie. The resistance-associated alleles S and D of codon 146 might be accepted as candidate alleles, due to their relative higher frequencies observed in the present study. A breeding program aiming to increase particularly the frequency of 146S might be applied. Predictions about impacts of a long-term breeding programme based on low initial allele frequencies and regarding its possible adverse effects are warranted. Our results might be a database for future breeding programmes, which should be carefully designed with adequate levels of genetic resistance and acceptable timeframe.

Indexed as

Polymorphism, GeneticAllelesAnimalsBreedingGene FrequencyGenotypeGoat DiseasesGoatsHaplotypesPrion ProteinsRisk FactorsScrapieTurkeyPrion ProteinsGoatHaplotypePrion protein geneScrapieSusceptibilityTurkey

Identifiers

PMID31630310
OpenAlexW2980856625

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.