Evidence map›Paper›PMID 31629878›Full record

ArticleGenomics2020

The first complete mitochondrial genome of the sand dollar Sinaechinocyamus mai (Echinoidea: Clypeasteroida).

Jih-Pai Lin, Mong-Hsun Tsai, Andreas Kroh, Aaron Trautman, Denis Jacob Machado, Lo-Yu Chang, Robert Reid, Kuan-Ting Lin, Omri Bronstein, Shyh-Jye Lee and 1 more

Abstract read
In one paragraph

Article in Genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. The mitochondrial genome of the deep-sea pyramid urchinMitochondrial DNA. Part B, Resources · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. The complete mitochondrial genome of the sand dollarMitochondrial DNA. Part B, Resources · 2022
    Article
  9. Article
  10. Article
  11. Developmental atlas of the indirect-developing sea urchinFrontiers in cell and developmental biology · 2022
    Article
  12. Article
  13. Article
  14. The first complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jih-Pai LinDepartment of Geosciences, National Taiwan University, Taipei, Taiwan. Electronic address: alexjplin@ntu.edu.tw.
Mong-Hsun TsaiInstitute of Biotechnology, National Taiwan University, Taipei, Taiwan.
Andreas KrohDepartment of Geology and Palaeontology, Natural History Museum Vienna, Vienna, Austria.
Aaron TrautmanDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, USA.
Denis Jacob MachadoDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, USA; Bioinformatics Graduate Program, University of São Paulo, Brazil.
Lo-Yu ChangDepartment of Geosciences, National Taiwan University, Taipei, Taiwan.
Robert ReidDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, USA.
Kuan-Ting LinInstitute of Biotechnology, National Taiwan University, Taipei, Taiwan.
Omri BronsteinSchool of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel-Aviv, Israel; Steinhardt Museum of Natural History, Tel-Aviv, Israel.
Shyh-Jye LeeDepartment of Life Science, National Taiwan University, Taipei, Taiwan; Research Center for Developmental Biology and Regenerative Medicine, National Taiwan University, Taipei, Taiwan.
Daniel JaniesDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, USA.

Funding

Austrian Science Fund FWF P 29508
6 · The paper itself

Abstract

Morphologic and molecular data often lead to different hypotheses of phylogenetic relationships. Such incongruence has been found in the echinoderm class Echinoidea. In particular, the phylogenetic status of the order Clypeasteroida is not well resolved. Complete mitochondrial genomes are currently available for 29 echinoid species, but no clypeasteroid had been sequenced to date. DNA extracted from a single live individual of Sinaechinocyamus mai was sequenced with 10× Genomics technology. This first complete mitochondrial genome (mitogenome) for the order Clypeasteroida is 15,756 base pairs in length. Phylogenomic analysis based on 34 ingroup taxa belonging to nine orders of the class Echinoidea show congruence between our new genetic inference and published trees based on morphologic characters, but also includes some intriguing differences that imply the need for additional investigation.

Indexed as

Genome, MitochondrialAnimalsPhylogenySea Urchins10X genomicsClypeasteroidaEchinodermataMitogenomePhylogeny

Identifiers

PMID31629878
PMCPMC7032948

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.