Evidence map›Paper›PMID 31629740›Full record

ArticleJournal of immunological methods2020

Use of GapmeRs for gene expression knockdowns in human primary resting CD4+ T cells.

Hosiana Abewe, Savitha Deshmukh, Amey Mukim, Nadejda Beliakova-Bethell

Open access · greenAbstract readEvaluation Study
In one paragraph

Article in Journal of immunological methods, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Hosiana AbeweSan Diego VA Medical Center and Veterans Medical Research Foundation, San Diego, CA 92161, USA; University of California San Diego, La Jolla, CA 92093, USA.
Savitha DeshmukhSan Diego VA Medical Center and Veterans Medical Research Foundation, San Diego, CA 92161, USA.
Amey MukimSan Diego VA Medical Center and Veterans Medical Research Foundation, San Diego, CA 92161, USA.
Nadejda Beliakova-BethellSan Diego VA Medical Center and Veterans Medical Research Foundation, San Diego, CA 92161, USA; University of California San Diego, La Jolla, CA 92093, USA. Electronic address: nbeliako@ucsd.edu.
Veterans Medical Research Foundation of San Diego · US

Funding

VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI David Mitchell Smith · 1994 to 2026
$78.4M
Synthetic Molecular Sensors to Target Latently Infected Cells for HIV EradicationR33AI104282 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI LOONEY, DAVID JAMES · 2016 to 2018
$1.3M
Synthetic Molecular Sensors to Target Latently Infected Cells for HIV EradicationR21AI104282 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI WOELK, CHRISTOPHER H · 2013 to 2014
$299k
HIV reactivation from latency - role of CD4 T cell maturation phenotypeIK2BX002731 · VA · VA SAN DIEGO HEALTHCARE SYSTEM · PI BELIAKOVA-BETHELL, NADEJDA S · 2016 to 2020
–
BLRD VA IK2 BX002731NIAID NIH HHS P30 AI036214NIAID NIH HHS R21 AI104282NIAID NIH HHS R33 AI104282
6 · The paper itself

Abstract

Human primary resting CD4+ T cells are difficult to transfect while preserving viability. The present study evaluated gymnotic delivery and RNase H1-dependent gene expression knockdown mediated by antisense oligonucleotides, called GapmeRs. Exposure of primary resting CD4+ T cells to GapmeRs did not cause cell activation or affect cell viability. Gene expression knockdowns were stable at least up to 48 h after removal of GapmeRs from culture. Exposure to GapmeRs resulted in comparable levels of degradation along the entire transcript, which could be important when studying function of regulatory long non-coding RNAs. Efficiency of transcript degradation was not solely dependent on the dose of GapmeR, RNA target and its localization. When using GapmeRs, some optimization is required, and all targets have to be individually tested; however, using GapmeRs is advantageous in experiments where preservation of the resting state of the human primary CD4+ T cells and targeting nuclear RNAs are desired. In certain cases, combining GapmeR with siRNA for the same target may improve knockdown efficiency.

Indexed as

Gene Knockdown TechniquesCD4-Positive T-LymphocytesCell SurvivalHMGA1a ProteinHumansLymphocyte ActivationOligonucleotides, AntisenseRNARNA, Long NoncodingRNA StabilityHMGA1a ProteinHMGA1 protein, humanOligonucleotides, AntisenseRNARNA, Long NoncodingAntisense oligonucleotidesGapmeRsGene expressionKnockdownPrimary CD4+ T cellsResting CD4+ T cells

Identifiers

PMID31629740
PMCPMC6939142
OpenAlexW2980674428

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.