Evidence map›Paper›PMID 31629014›Full record

Trial reportThe Journal of allergy and clinical immunology2020

Combined immunodeficiency caused by a loss-of-function mutation in DNA polymerase delta 1.

Ye Cui, Sevgi Keles, Louis-Marie Charbonnier, Amélie M Julé, Lauren Henderson, Seyma Celikbilek Celik, Ismail Reisli, Chen Shen, Wen Jun Xie, Klaus Schmitz-Abe and 2 more

Open access · bronzeAbstract readCase ReportsClinical Trial
In one paragraph

Trial report in The Journal of allergy and clinical immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Canonical binding ofFrontiers in molecular biosciences · 2023
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. CTCF Mediates Replicative Senescence Through POLD1.Frontiers in cell and developmental biology · 2021
    Article
  13. Article
  14. Review
  15. Human inborn errors of immunity to herpes viruses.Current opinion in immunology · 2020
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Ye CuiDivision of Immunology, Boston Children's Hospital, and the Department of Pediatrics, Harvard Medical School, Boston, Mass.
Sevgi KelesNecmettin Erbakan University, Meram Medical Faculty, Division of Pediatric Allergy and Immunology, Konya, Turkey.
Louis-Marie CharbonnierDivision of Immunology, Boston Children's Hospital, and the Department of Pediatrics, Harvard Medical School, Boston, Mass.
Amélie M JuléDivision of Immunology, Boston Children's Hospital, and the Department of Pediatrics, Harvard Medical School, Boston, Mass.
Lauren HendersonDivision of Immunology, Boston Children's Hospital, and the Department of Pediatrics, Harvard Medical School, Boston, Mass.
Seyma Celikbilek CelikNecmettin Erbakan University, Meram Medical Faculty, Division of Pediatric Allergy and Immunology, Konya, Turkey.
Ismail ReisliNecmettin Erbakan University, Meram Medical Faculty, Division of Pediatric Allergy and Immunology, Konya, Turkey.
Chen ShenProgram in Molecular and Cellular Medicine, Department of Pediatrics, Boston Children's Hospital, Harvard Medical School, Boston, Mass; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Mass.
Wen Jun XieDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, Mass.
Klaus Schmitz-AbeDivision of Newborn Medicine and Neonatal Genomics Program, Boston Children's Hospital, Harvard Medical School, Boston, Mass.
Hao WuDivision of Immunology, Boston Children's Hospital, and the Department of Pediatrics, Harvard Medical School, Boston, Mass; Program in Molecular and Cellular Medicine, Department of Pediatrics, Boston Children's Hospital, Harvard Medical School, Boston, Mass.
Talal A ChatilaDivision of Immunology, Boston Children's Hospital, and the Department of Pediatrics, Harvard Medical School, Boston, Mass. Electronic address: talal.chatila@childrens.harvard.edu.
Boston Children's Hospital · USNecmettin Erbakan University · TRMassachusetts Institute of Technology · US

Funding

Mechanisms of Disease Pathogenesis in Regulatory T cell DeficiencyR01AI085090 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHATILA, TALAL AMINE, WILLIAMS, CALVIN B · 2010 to 2020
$3.9M
Mechanisms of Combined Immunodeficiency due to DOCK8 DeficiencyR01AI128976 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI CHATILA, TALAL AMINE · 2018 to 2021
$1.4M
NIAID NIH HHS R01 AI085090NIAID NIH HHS R01 AI128976
6 · The paper itself

Abstract

backgroundMutations affecting DNA polymerases have been implicated in genomic instability and cancer development, but the mechanisms by which they can affect the immune system remain largely unexplored.

objectiveWe sought to establish the role of DNA polymerase δ1 catalytic subunit (POLD1) as the cause of a primary immunodeficiency in an extended kindred.

methodsWe performed whole-exome and targeted gene sequencing, lymphocyte characterization, molecular and functional analyses of the DNA polymerase δ (Polδ) complex, and T- and B-cell antigen receptor repertoire analysis.

resultsWe identified a missense mutation (c. 3178C>T; p.R1060C) in POLD1 in 3 related subjects who presented with recurrent, especially herpetic, infections and T-cell lymphopenia with impaired T-cell but not B-cell proliferation. The mutation destabilizes the Polδ complex, leading to ineffective recruitment of replication factor C to initiate DNA replication. Molecular dynamics simulation revealed that the R1060C mutation disrupts the intramolecular interaction between the POLD1 CysB motif and the catalytic domain and also between POLD1 and the Polδ subunit POLD2. The patients exhibited decreased numbers of naive CD4 and especially CD8 T cells in favor of effector memory subpopulations. This skewing was associated with oligoclonality and restricted T-cell receptor β-chain V-J pairing in CD8

conclusionThese results identify gene defects in POLD1 as a novel cause of T-cell immunodeficiency.

Indexed as

DNA Polymerase IIILoss of Function MutationMutation, MissenseSevere Combined ImmunodeficiencyAdolescentAmino Acid MotifsChild, PreschoolExome SequencingFemaleHEK293 CellsHumansProtein DomainsDNA Polymerase IIIPOLD1 protein, humanDNA polymerase delta 1DNA polymerase δ1 catalytic subunitPOLD1primary immunodeficiencyreplication factor Cwhole-exome sequencing

Identifiers

PMID31629014
PMCPMC6961977
OpenAlexW2980699422

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.