Evidence map›Paper›PMID 31628328›Full record

ArticleNature communications2019

Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7.

Kyoko Hanawa-Suetsugu, Yuzuru Itoh, Maisarah Ab Fatah, Tamako Nishimura, Kazuhiro Takemura, Kohei Takeshita, Satoru Kubota, Naoyuki Miyazaki, Wan Nurul Izzati Wan Mohamad Noor, Takehiko Inaba and 10 more

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Kyoko Hanawa-SuetsuguNara Institute of Science and Technology, Ikoma, 630-0192, Japan.
Yuzuru ItohUniversity of Tokyo, Tokyo, 113-0032, Japan.
Maisarah Ab FatahNara Institute of Science and Technology, Ikoma, 630-0192, Japan.
Tamako NishimuraNara Institute of Science and Technology, Ikoma, 630-0192, Japan.
Kazuhiro TakemuraSchool of Life Science and Technology, Tokyo Institute of Technology, Tokyo, 152-8550, Japan.
Kohei TakeshitaRIKEN SPring-8 Center, Sayo, Hyogo, 679-5148, Japan.
Satoru KubotaNara Institute of Science and Technology, Ikoma, 630-0192, Japan.
Naoyuki MiyazakiInstitute for Protein Research, Osaka University, Suita, Osaka, 565-0871, Japan.
Wan Nurul Izzati Wan Mohamad NoorNara Institute of Science and Technology, Ikoma, 630-0192, Japan.
Takehiko InabaNara Institute of Science and Technology, Ikoma, 630-0192, Japan.
Nhung Thi Hong NguyenNara Institute of Science and Technology, Ikoma, 630-0192, Japan.
Sayaka Hamada-NakaharaUniversity of Tokyo, Tokyo, 113-0032, Japan.
Kayoko Oono-YakuraNara Institute of Science and Technology, Ikoma, 630-0192, Japan.
Masashi TachikawaTheoretical Biology Laboratory, RIKEN, Wako, 351-0198, Japan.
Kenji IwasakiInstitute for Protein Research, Osaka University, Suita, Osaka, 565-0871, Japan.ORCID http://orcid.org/0000-0002-3808-8904
Daisuke KohdaRIKEN SPring-8 Center, Sayo, Hyogo, 679-5148, Japan.ORCID http://orcid.org/0000-0001-8234-3776
Masaki YamamotoRIKEN SPring-8 Center, Sayo, Hyogo, 679-5148, Japan.
Akio KitaoSchool of Life Science and Technology, Tokyo Institute of Technology, Tokyo, 152-8550, Japan.ORCID http://orcid.org/0000-0002-5221-0806
Atsushi ShimadaRIKEN SPring-8 Center, Sayo, Hyogo, 679-5148, Japan. ashimada@bioreg.kyushu-u.ac.jp.ORCID http://orcid.org/0000-0002-4108-770X
Shiro SuetsuguNara Institute of Science and Technology, Ikoma, 630-0192, Japan. suetsugu@bs.naist.jp.ORCID http://orcid.org/0000-0002-4612-0628

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phagocytosis is a cellular process for internalization of micron-sized large particles including pathogens. The Bin-Amphiphysin-Rvs167 (BAR) domain proteins, including the FCH-BAR (F-BAR) domain proteins, impose specific morphologies on lipid membranes. Most BAR domain proteins are thought to form membrane invaginations or protrusions by assembling into helical submicron-diameter filaments, such as on clathrin-coated pits, caveolae, and filopodia. However, the mechanism by which BAR domain proteins assemble into micron-scale phagocytic cups was unclear. Here, we show that the two-dimensional sheet-like assembly of Growth Arrest-Specific 7 (GAS7) plays a critical role in phagocytic cup formation in macrophages. GAS7 has the F-BAR domain that possesses unique hydrophilic loops for two-dimensional sheet formation on flat membranes. Super-resolution microscopy reveals the similar assemblies of GAS7 on phagocytic cups and liposomes. The mutations of the loops abolishes both the membrane localization of GAS7 and phagocytosis. Thus, the sheet-like assembly of GAS7 plays a significant role in phagocytosis.

Indexed as

PhagocytosisAmino Acid SequenceAnimalsCell MembraneHeLa CellsHumansMacrophagesMembrane LipidsMiceMicroscopy, ElectronMicroscopy, FluorescenceModels, MolecularMutationNerve Tissue ProteinsProtein DomainsProtein IsoformsGas7 protein, mouseMembrane LipidsNerve Tissue ProteinsProtein Isoforms

Identifiers

PMID31628328
PMCPMC6802115

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.