ArticleGenome research2019
PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data.
Article in Genome research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.
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Who cites it
46 citing papers in PubMed.
- Statistical Inconsistency of Error-correction Objectives for Perfect Phylogenies.bioRxiv : the preprint server for biology · 2026Article
- Identifying Robust Subclonal Structures through Tumor Progression Tree Alignment.bioRxiv : the preprint server for biology · 2026Article
- Single-cell copy number alteration signature analysis reveals masked patterns and potential biomarkers for cancer.Communications biology · 2025Article
- Sc-TUSV-Ext: Single-Cell Clonal Lineage Inference from Single Nucleotide Variants, Copy Number Alterations, and Structural Variants.Journal of computational biology : a journal of computational molecular cell biology · 2025Article
- Mitoclone2: an R package for elucidating clonal structure in single-cell RNA-sequencing data using mitochondrial variants.NAR genomics and bioinformatics · 2024Article
- Somatic mutation phasing and haplotype extension using linked-reads in multiple myeloma.bioRxiv : the preprint server for biology · 2024Article
- Joint inference of cell lineage and mitochondrial evolution from single-cell sequencing data.Bioinformatics (Oxford, England) · 2024Article
- Resolving tumor evolution: a phylogenetic approach.Journal of the National Cancer Center · 2024Review
- Article
- Predicting horizontal gene transfers with perfect transfer networks.Algorithms for molecular biology : AMB · 2024Article
- Assessing the merits: an opinion on the effectiveness of simulation techniques in tumor subclonal reconstruction.Bioinformatics advances · 2024Article
- Quartets enable statistically consistent estimation of cell lineage trees under an unbiased error and missingness model.Algorithms for molecular biology : AMB · 2023Article
- ConDoR: tumor phylogeny inference with a copy-number constrained mutation loss model.Genome biology · 2023Article
- Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors.PLoS computational biology · 2023Article
- Single-cell methylation sequencing data reveal succinct metastatic migration histories and tumor progression models.Genome research · 2023Article
- A weighted distance-based approach for deriving consensus tumor evolutionary trees.Bioinformatics (Oxford, England) · 2023Article
- ConDoR: Tumor phylogeny inference with a copy-number constrained mutation loss model.bioRxiv : the preprint server for biology · 2023Article
- Scelestial: Fast and accurate single-cell lineage tree inference based on a Steiner tree approximation algorithm.PLoS computational biology · 2022Article
- Semi-deconvolution of bulk and single-cell RNA-seq data with application to metastatic progression in breast cancer.Bioinformatics (Oxford, England) · 2022Article
- Reconstructing tumor clonal lineage trees incorporating single-nucleotide variants, copy number alterations and structural variations.Bioinformatics (Oxford, England) · 2022Article
Corrections and comments
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Authors and funding
10 authors.
Funding
Abstract
Available computational methods for tumor phylogeny inference via single-cell sequencing (SCS) data typically aim to identify the most likely
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.