Evidence map›Paper›PMID 31627867›Full record

ArticleBiomedical journal2019

Role of SCN5A coding and non-coding sequences in Brugada syndrome onset: What's behind the scenes?

Houria Daimi, Amel Haj Khelil, Ali Neji, Khaldoun Ben Hamda, Sabri Maaoui, Amelia Aranega, Jemni Be Chibani, Diego Franco

Open access · goldAbstract read
In one paragraph

Article in Biomedical journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Leucocyte-derived micro-RNAs as candidate biomarkers in Brugada syndrome.Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology · 2023
    Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Role of Non-Coding Variants in Brugada Syndrome.International journal of molecular sciences · 2020
    Review
  12. Review
  13. Review
  14. Review
  15. The many (sur)faces of B cells.Biomedical journal · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Houria DaimiDepartment of Experimental Biology, University of Jaen, Spain; Biochemistry and Molecular Biology Laboratory, Faculty of Pharmacy, University of Monastir, Monastir, Tunisia.
Amel Haj KhelilBiochemistry and Molecular Biology Laboratory, Faculty of Pharmacy, University of Monastir, Monastir, Tunisia.
Ali NejiFattouma Bourguiba Hospital, Monastir, Tunisia.
Khaldoun Ben HamdaFattouma Bourguiba Hospital, Monastir, Tunisia.
Sabri MaaouiFattouma Bourguiba Hospital, Monastir, Tunisia.
Amelia AranegaDepartment of Experimental Biology, University of Jaen, Spain.
Jemni Be ChibaniBiochemistry and Molecular Biology Laboratory, Faculty of Pharmacy, University of Monastir, Monastir, Tunisia.
Diego FrancoDepartment of Experimental Biology, University of Jaen, Spain. Electronic address: dfranco@ujaen.es.
Hospital Fatuma Bourguiba Monastir · TNUniversidad de Jaén · ESUniversity of Monastir · TN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBrugada syndrome (BrS) is a rare inherited cardiac arrhythmia associated with a high risk of sudden cardiac death (SCD) due to ventricular fibrillation (VF). BrS is characterized by coved-type ST-segment elevation in the right precordial leads (V1-V3). Mutations in SCN5A gene coding for the α-subunit of the NaV1.5 cardiac sodium channel are identified in 15-30% of BrS cases. Genetic testing of BrS patients generally involves sequencing of the protein-coding portions and flanking intronic regions of SCN5A. This excludes the 5'UTR and 3'UTR from the routine genetic testing.

methodsWe here screened the coding sequence, the flanking intronic regions as well as the 5' and 3'UTR regions of SCN5A gene and further five candidate genes (GPD1L, SCN1B, KCNE3, SCN4B, and MOG1) in a Tunisian family diagnosed with BrS.

resultsA new SCN5A-Q1000K mutation was identified along with two common polymorphisms (H558R and D1819). Multiple genetic variants were identified on the SCN5A 3'UTR, one of which is predicted to create additional microRNA binding site for miR-1270. Additionally, we identified the hsa-miR-219a-rs107822. No relevant coding sequence variant was identified in the remaining studied candidate genes.

conclusionsThe absence of genotype-phenotype concordance within all the identified genetic variants in this family gives extra evidences about the complexity of the disease and suggests that the occurrence and prognosis of BrS is most likely controlled by a combination of multiple genetic factors, rather than a single variant. Most SCN5A variants were localized in non-coding regions hypothesizing an impact on the miRNA-target complementarities.

Indexed as

AdultAgedBrugada SyndromeFemaleGenotypeHumansMaleMicroRNAsMiddle AgedMutationNAV1.5 Voltage-Gated Sodium ChannelPhenotypePolymorphism, GeneticPotassium Channels, Voltage-GatedMicroRNAsNAV1.5 Voltage-Gated Sodium ChannelPotassium Channels, Voltage-GatedSCN5A protein, human3′UTRBrugada syndromeGenotype-phenotype correlationmicroRNAsSCN5A

Identifiers

PMID31627867
PMCPMC6818142
OpenAlexW2972418268

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.