Evidence map›Paper›PMID 31626768›Full record

ArticleCell2019

Synergistic Coordination of Chromatin Torsional Mechanics and Topoisomerase Activity.

Tung T Le, Xiang Gao, Seong Ha Park, Jaeyoon Lee, James T Inman, Joyce H Lee, Jessica L Killian, Ryan P Badman, James M Berger, Michelle D Wang

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 82 citations in OpenAlex.

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  16. Geometry of Braided DNA Dictates Supercoiling Partition.bioRxiv : the preprint server for biology · 2024
    Article
  17. Article
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  20. Nucleosomes play a dual role in regulating transcription dynamics.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Tung T LeHoward Hughes Medical Institute, Cornell University, Ithaca, NY 14853, USA; Physics Department & LASSP, Cornell University, Ithaca, NY 14853, USA.
Xiang GaoHoward Hughes Medical Institute, Cornell University, Ithaca, NY 14853, USA; Physics Department & LASSP, Cornell University, Ithaca, NY 14853, USA.
Seong Ha ParkBiophysics Program, Cornell University, Ithaca, NY 14853, USA.
Jaeyoon LeePhysics Department & LASSP, Cornell University, Ithaca, NY 14853, USA.
James T InmanHoward Hughes Medical Institute, Cornell University, Ithaca, NY 14853, USA; Physics Department & LASSP, Cornell University, Ithaca, NY 14853, USA.
Joyce H LeeDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Jessica L KillianHoward Hughes Medical Institute, Cornell University, Ithaca, NY 14853, USA; Physics Department & LASSP, Cornell University, Ithaca, NY 14853, USA.
Ryan P BadmanPhysics Department & LASSP, Cornell University, Ithaca, NY 14853, USA.
James M BergerDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Michelle D WangHoward Hughes Medical Institute, Cornell University, Ithaca, NY 14853, USA; Physics Department & LASSP, Cornell University, Ithaca, NY 14853, USA. Electronic address: mwang@physics.cornell.edu.
Howard Hughes Medical Institute · USCornell University · USJohns Hopkins Medicine · USJohns Hopkins University · US

Funding

BIOCHEMISTRY, CELLULAR AND MOLECULAR BIOLOGY PROGRAMT32GM007445 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI GREEN, RACHEL · 1985 to 2021
$24.1M
TRAINING IN MOLECULAR PHYSICS OF BIOLOGICAL SYSTEMST32GM008267 · NIGMS · CORNELL UNIVERSITY ITHACA · PI WANG, MICHELLE D. · 1988 to 2021
$9.6M
Structural and Biochemical Analyses of Type II DNA TopoisomerasesR01CA077373 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI BERGER, JAMES M. · 1999 to 2021
$7.6M
Understanding and exploiting DNA topoisomerases in cancer biologyR35CA263778 · NCI · JOHNS HOPKINS UNIVERSITY · PI James M. Berger · 2021 to 2026
$5.0M
Fundamental Biological Processes Under TorsionR01GM136894 · NIGMS · CORNELL UNIVERSITY · PI WANG, MICHELLE D. · 2020 to 2023
$1.2M
Discovery of metabolic regulators of DNA topology and cellular responses to topoisomerase II inhibitionF31CA224896 · NCI · JOHNS HOPKINS UNIVERSITY · PI LEE, JOYCE · 2018 to 2019
$90k
Howard Hughes Medical InstituteNCI NIH HHS F31 CA224896NCI NIH HHS R01 CA077373NCI NIH HHS R35 CA263778NIGMS NIH HHS R01 GM136894NIGMS NIH HHS T32 GM007445NIGMS NIH HHS T32 GM008267
6 · The paper itself

Abstract

DNA replication in eukaryotes generates DNA supercoiling, which may intertwine (braid) daughter chromatin fibers to form precatenanes, posing topological challenges during chromosome segregation. The mechanisms that limit precatenane formation remain unclear. By making direct torque measurements, we demonstrate that the intrinsic mechanical properties of chromatin play a fundamental role in dictating precatenane formation and regulating chromatin topology. Whereas a single chromatin fiber is torsionally soft, a braided fiber is torsionally stiff, indicating that supercoiling on chromatin substrates is preferentially directed in front of the fork during replication. We further show that topoisomerase II relaxation displays a strong preference for a single chromatin fiber over a braided fiber. These results suggest a synergistic coordination-the mechanical properties of chromatin inherently suppress precatenane formation during replication elongation by driving DNA supercoiling ahead of the fork, where supercoiling is more efficiently removed by topoisomerase II. VIDEO ABSTRACT.

Indexed as

TorqueChromatinDNA ReplicationDNA, SuperhelicalDNA Topoisomerases, Type IIHeLa CellsHumansOptical TweezersSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsChromatinDNA, SuperhelicalDNA Topoisomerases, Type IISaccharomyces cerevisiae Proteinsangular optical trapbraidingchromatinDNA supercoilingfork rotationmagnetic tweezersreplicationtopoisomerasetorquetorsional modulus

Identifiers

PMID31626768
PMCPMC6899335
OpenAlexW2980513594

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.