Evidence map›Paper›PMID 31625848›Full record

ArticleEmerging infectious diseases2019

Comparison of Whole-Genome Sequences of Legionella pneumophila in Tap Water and in Clinical Strains, Flint, Michigan, USA, 2016.

Emily Garner, Connor L Brown, David Otto Schwake, William J Rhoads, Gustavo Arango-Argoty, Liqing Zhang, Guillaume Jospin, David A Coil, Jonathan A Eisen, Marc A Edwards and 1 more

Abstract read
In one paragraph

Article in Emerging infectious diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Journal of bacteriology · 2024
    Review
  4. Article
  5. Article
  6. Article
  7. A Legionnaires' Disease Cluster in a Private Building in Italy.International journal of environmental research and public health · 2021
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Emily Garner
Connor L Brown
David Otto Schwake
William J Rhoads
Gustavo Arango-Argoty
Liqing Zhang
Guillaume Jospin
David A Coil
Jonathan A Eisen
Marc A Edwards
Amy Pruden

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During the water crisis in Flint, Michigan, USA (2014-2015), 2 outbreaks of Legionnaires' disease occurred in Genesee County, Michigan. We compared whole-genome sequences of 10 clinical Legionella pneumophila isolates submitted to a laboratory in Genesee County during the second outbreak with 103 water isolates collected the following year. We documented a genetically diverse range of L. pneumophila strains across clinical and water isolates. Isolates belonging to 1 clade (3 clinical isolates, 3 water isolates from a Flint hospital, 1 water isolate from a Flint residence, and the reference Paris strain) had a high degree of similarity (2-1,062 single-nucleotide polymorphisms), all L. pneumophila sequence type 1, serogroup 1. Serogroup 6 isolates belonging to sequence type 2518 were widespread in Flint hospital water samples but bore no resemblance to available clinical isolates. L. pneumophila strains in Flint tap water after the outbreaks were diverse and similar to some disease-causing strains.

Indexed as

Genome, BacterialWater MicrobiologyWhole Genome SequencingDrinking WaterHumansLegionella pneumophilaLegionnaires' DiseaseMichiganPhylogenyPolymorphism, Single NucleotideDrinking Waterbacteriadrinking waterFlintLegionellaLegionella pneumophilaLegionnaires’ diseaseMichigantap waterUnited Stateswhole-genome sequencing

Identifiers

PMID31625848
PMCPMC6810188

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.