Evidence map›Paper›PMID 31625650›Full record

ArticleJournal of magnetic resonance imaging : JMRI2020

Deep-Learning-Based Neural Tissue Segmentation of MRI in Multiple Sclerosis: Effect of Training Set Size.

Ponnada A Narayana, Ivan Coronado, Sheeba J Sujit, Jerry S Wolinsky, Fred D Lublin, Refaat E Gabr

Abstract readMulticenter Study
In one paragraph

Article in Journal of magnetic resonance imaging : JMRI, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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  8. Opportunities and Challenges in Applying AI to Evolutionary Morphology.Integrative organismal biology (Oxford, England) · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ponnada A NarayanaDepartment of Diagnostic and Interventional Imaging, McGovern Medical School, University of Texas Health Science Center, Houston, Texas, USA.ORCID 0000-0002-5703-4346
Ivan CoronadoDepartment of Diagnostic and Interventional Imaging, McGovern Medical School, University of Texas Health Science Center, Houston, Texas, USA.
Sheeba J SujitDepartment of Diagnostic and Interventional Imaging, McGovern Medical School, University of Texas Health Science Center, Houston, Texas, USA.ORCID 0000-0001-8302-7046
Jerry S WolinskyDepartment of Neurology, McGovern Medical School, University of Texas Health Science Center, Houston, Texas, USA.
Fred D LublinDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Refaat E GabrDepartment of Diagnostic and Interventional Imaging, McGovern Medical School, University of Texas Health Science Center, Houston, Texas, USA.

Funding

Predicting contrast enhancement in multiple sclerosis with real time texture analysisR56NS105857 · NINDS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI NARAYANA, PONNADA A · 2018 to 2018
$536k
NINDS NIH HHS R56 NS105857
6 · The paper itself

Abstract

backgroundThe dependence of deep-learning (DL)-based segmentation accuracy of brain MRI on the training size is not known. PURPOSE: To determine the required training size for a desired accuracy in brain MRI segmentation in multiple sclerosis (MS) using DL. STUDY TYPE: Retrospective analysis of MRI data acquired as part of a multicenter clinical trial. STUDY POPULATION: In all, 1008 patients with clinically definite MS. FIELD STRENGTH/SEQUENCE: MRIs were acquired at 1.5T and 3T scanners manufactured by GE, Philips, and Siemens with dual turbo spin echo, FLAIR, and T ASSESSMENT: Segmentation results using an automated analysis pipeline and validated by two neuroimaging experts served as the ground truth. A DL model, based on a fully convolutional neural network, was trained separately using 16 different training sizes. The segmentation accuracy as a function of the training size was determined. These data were fitted to the learning curve for estimating the required training size for desired accuracy. STATISTICAL TESTS: The performance of the network was evaluated by calculating the Dice similarity coefficient (DSC), and lesion true-positive and false-positive rates.

resultsThe DSC for lesions showed much stronger dependency on the sample size than gray matter (GM), white matter (WM), and cerebrospinal fluid (CSF). When the training size was increased from 10 to 800 the DSC values varied from 0.00 to 0.86 ± 0.016 for T DATA

conclusionExcellent segmentation was achieved with a training size as small as 10 image volumes for GM, WM, and CSF. In contrast, a training size of at least 50 image volumes was necessary for adequate lesion segmentation. LEVEL OF EVIDENCE: 1 Technical Efficacy Stage: 1 J. Magn. Reson. Imaging 2020;51:1487-1496.

Indexed as

Deep LearningMultiple SclerosisBrainHumansImage Processing, Computer-AssistedMagnetic Resonance ImagingRetrospective Studiesdeep learningMRImultiple sclerosissegmentation

Identifiers

PMID31625650
PMCPMC7165037

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.