Evidence map›Paper›PMID 31625609›Full record

ArticleThe New phytologist2020

PIRIN2 suppresses S-type lignin accumulation in a noncell-autonomous manner in Arabidopsis xylem elements.

Bo Zhang, Bernadette Sztojka, Sacha Escamez, Ruben Vanholme, Mattias Hedenström, Yin Wang, Halbay Turumtay, András Gorzsás, Wout Boerjan, Hannele Tuominen

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Plants (Basel, Switzerland) · 2026
    Article
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  4. Article
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  9. Article
  10. Transcriptomic Analysis of Radish (Plants (Basel, Switzerland) · 2022
    Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Bo ZhangDepartment of Plant Physiology, Umeå Plant Science Centre, Umeå University, S-901 87, Umeå, Sweden.
Bernadette SztojkaDepartment of Plant Physiology, Umeå Plant Science Centre, Umeå University, S-901 87, Umeå, Sweden.
Sacha EscamezDepartment of Plant Physiology, Umeå Plant Science Centre, Umeå University, S-901 87, Umeå, Sweden.
Ruben VanholmeDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052, Ghent, Belgium.
Mattias HedenströmDepartment of Chemistry, Umeå University, S-901 87, Umeå, Sweden.
Yin WangDepartment of Plant Physiology, Umeå Plant Science Centre, Umeå University, S-901 87, Umeå, Sweden.
Halbay TurumtayDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052, Ghent, Belgium.
András GorzsásDepartment of Chemistry, Umeå University, S-901 87, Umeå, Sweden.ORCID 0000-0002-2298-8844
Wout BoerjanDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052, Ghent, Belgium.ORCID 0000-0003-1495-510X
Hannele TuominenDepartment of Plant Physiology, Umeå Plant Science Centre, Umeå University, S-901 87, Umeå, Sweden.ORCID 0000-0002-4949-3702
Umeå Plant Science Centre · SEGhent University · BEUmeå University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PIRIN (PRN) genes encode cupin domain-containing proteins that function as transcriptional co-regulators in humans but that are poorly described in plants. A previous study in xylogenic cell cultures of Zinnia elegans suggested a role for a PRN protein in lignification. This study aimed to identify the function of Arabidopsis (Arabidopsis thaliana) PRN proteins in lignification of xylem tissues. Chemical composition of the secondary cell walls was analysed in Arabidopsis stems and/or hypocotyls by pyrolysis-gas chromatography/mass spectrometry, 2D-nuclear magnetic resonance and phenolic profiling. Secondary cell walls of individual xylem elements were chemotyped by Fourier transform infrared and Raman microspectroscopy. Arabidopsis PRN2 suppressed accumulation of S-type lignin in Arabidopsis stems and hypocotyls. PRN2 promoter activity and PRN2:GFP fusion protein were localised specifically in cells next to the vessel elements, suggesting a role for PRN2 in noncell-autonomous lignification of xylem vessels. Accordingly, PRN2 modulated lignin chemistry in the secondary cell walls of the neighbouring vessel elements. These results indicate that PRN2 suppresses S-type lignin accumulation in the neighbourhood of xylem vessels to bestow G-type enriched lignin composition on the secondary cell walls of the vessel elements. Gene expression analyses suggested that PRN2 function is mediated by regulation of the expression of the lignin-biosynthetic genes.

Indexed as

ArabidopsisArabidopsis ProteinsCell WallGene Expression Regulation, PlantLigninXylemArabidopsis ProteinsLigninArabidopsislignificationnoncell-autonomyPIRINxylem vessel element

Identifiers

PMID31625609
PMCPMC7027918
OpenAlexW2980923207

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.