Evidence map›Paper›PMID 31625146›Full record

ArticleThe Journal of pathology2020

Clarin-1 expression in adult mouse and human retina highlights a role of Müller glia in Usher syndrome.

Lei Xu, Susan N Bolch, Clayton P Santiago, Frank M Dyka, Omar Akil, Ekaterina S Lobanova, Yuchen Wang, Kirill A Martemyanov, William W Hauswirth, W Clay Smith and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of pathology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Nonsense Mutation inInternational journal of molecular sciences · 2026
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  5. Review
  6. Development of Retinal Astroglia.Annual review of vision science · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Lei XuDepartment of Ophthalmology, University of Florida, Gainesville, FL, USA.
Susan N BolchDepartment of Ophthalmology, University of Florida, Gainesville, FL, USA.
Clayton P SantiagoSolomon H Snyder Department of Neuroscience, Johns Hopkins University, School of Medicine, Baltimore, MD, USA.
Frank M DykaDepartment of Ophthalmology, University of Florida, Gainesville, FL, USA.
Omar AkilDepartment of Otolaryngology-HNS, University of California, San Francisco, CA, USA.
Ekaterina S LobanovaDepartment of Ophthalmology, University of Florida, Gainesville, FL, USA.
Yuchen WangDepartment of Neuroscience, The Scripps Research Institute, Jupiter, FL, USA.
Kirill A MartemyanovDepartment of Neuroscience, The Scripps Research Institute, Jupiter, FL, USA.
William W HauswirthDepartment of Ophthalmology, University of Florida, Gainesville, FL, USA.
W Clay SmithDepartment of Ophthalmology, University of Florida, Gainesville, FL, USA.
James T HandaDepartment of Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0000-0003-1314-1745
Seth BlackshawSolomon H Snyder Department of Neuroscience, Johns Hopkins University, School of Medicine, Baltimore, MD, USA.
John D AshDepartment of Ophthalmology, University of Florida, Gainesville, FL, USA.
Astra DinculescuDepartment of Ophthalmology, University of Florida, Gainesville, FL, USA.ORCID 0000-0001-6328-8601
University of Florida · USJohns Hopkins University · USScripps Research Institute · USUniversity of California, San Francisco · US

Funding

Regulation of Signaling in the Retina by RGS ProteinsR01EY018139 · NEI · UNIVERSITY OF MINNESOTA · PI MARTEMYANOV, KIRILL A. · 2007 to 2025
$8.9M
CLARIN 1 RETINAL FUNCTION AND THERAPEUTIC IMPLICATIONS FOR USH3R01EY026559 · NEI · UNIVERSITY OF FLORIDA · PI ASTRA DINCULESCU, Brian A Link · 2016 to 2026
$4.7M
Molecular Basis of Photoreceptor WiringR01EY028033 · NEI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Kirill A. Martemyanov, Alapakkam P Sampath · 2017 to 2026
$4.6M
Transcriptional regulation of retinal cell differentiation and functionR01EY020560 · NEI · JOHNS HOPKINS UNIVERSITY · PI BLACKSHAW, SETH · 2011 to 2021
$4.4M
Cytokine Regulation of Photoreceptor Gene ExpressionR01EY016459 · NEI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI ASH, JOHN D · 2006 to 2017
$4.0M
Comparative transcriptomic and epigenomic analyses of Muller glia reprogrammingU01EY027267 · NEI · UNIVERSITY OF NOTRE DAME · PI BLACKSHAW, SETH, HYDE, DAVID R · 2016 to 2019
$3.0M
Oxidative stress and innate immunity impair the visual cycleR01EY027691 · NEI · JOHNS HOPKINS UNIVERSITY · PI HANDA, JAMES T · 2017 to 2021
$2.7M
Transcriptional Control of Proteostsis in PhotoreceptorsR01EY030043 · NEI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LOBANOVA, EKATERINA · 2019 to 2023
$1.8M
Molecular Basis of RGS Protein Function in the StriatumK02DA026405 · NIDA · UNIVERSITY OF MINNESOTA · PI MARTEMYANOV, KIRILL A. · 2009 to 2019
$1.2M
Trans-synaptic mechanism of retinal synapse formation and functionK99EY030554 · NEI · UNIVERSITY OF FLORIDA · PI WANG, YUCHEN · 2019 to 2022
$233k
NEI NIH HHS EY016459NEI NIH HHS EY018139NEI NIH HHS EY026559NEI NIH HHS EY027267NEI NIH HHS EY027691NEI NIH HHS K99 EY030554NEI NIH HHS R01 EY016459NEI NIH HHS R01 EY018139NEI NIH HHS R01 EY020560NEI NIH HHS R01 EY026559NEI NIH HHS R01 EY027691NEI NIH HHS R01 EY028033NEI NIH HHS R01 EY030043NEI NIH HHS U01 EY027267NIDA NIH HHS K02 DA026405
6 · The paper itself

Abstract

Usher syndrome type 3 (USH3) is an autosomal recessively inherited disorder caused by mutations in the gene clarin-1 (CLRN1), leading to combined progressive hearing loss and retinal degeneration. The cellular distribution of CLRN1 in the retina remains uncertain, either because its expression levels are low or because its epitopes are masked. Indeed, in the adult mouse retina, Clrn1 mRNA is developmentally downregulated, detectable only by RT-PCR. In this study we used the highly sensitive RNAscope in situ hybridization assay and single-cell RNA-sequencing techniques to investigate the distribution of Clrn1 and CLRN1 in mouse and human retina, respectively. We found that Clrn1 transcripts in mouse tissue are localized to the inner retina during postnatal development and in adult stages. The pattern of Clrn1 mRNA cellular expression is similar in both mouse and human adult retina, with CLRN1 transcripts being localized in Müller glia, and not photoreceptors. We generated a novel knock-in mouse with a hemagglutinin (HA) epitope-tagged CLRN1 and showed that CLRN1 is expressed continuously at the protein level in the retina. Following enzymatic deglycosylation and immunoblotting analysis, we detected a single CLRN1-specific protein band in homogenates of mouse and human retina, consistent in size with the main CLRN1 isoform. Taken together, our results implicate Müller glia in USH3 pathology, placing this cell type to the center of future mechanistic and therapeutic studies to prevent vision loss in this disease. © 2019 The Authors. The Journal of Pathology published by John Wiley & Sons Ltd on behalf of Pathological Society of Great Britain and Ireland.

Indexed as

AnimalsEpendymoglial CellsGlycosylationHumansIn Situ HybridizationMembrane ProteinsMice, Inbred C57BLNeurogliaRetinaRNA, MessengerUsher SyndromesCLRN1 protein, humanClrn1 protein, mouseMembrane ProteinsRNA, Messengerclarin-1 expressionhuman retinaMüller gliaretinal degenerationtranscriptomic analysisUsher syndrome pathology

Identifiers

PMID31625146
PMCPMC7003947
OpenAlexW2981153991

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.