Evidence map›Paper›PMID 31624339›Full record

ArticleScientific reports2019

Differential expression and co-expression gene network analyses reveal molecular mechanisms and candidate biomarkers involved in breast muscle myopathies in chicken.

Eva Pampouille, Christelle Hennequet-Antier, Christophe Praud, Amélie Juanchich, Aurélien Brionne, Estelle Godet, Thierry Bordeau, Fréderic Fagnoul, Elisabeth Le Bihan-Duval, Cécile Berri

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 56 citations in OpenAlex.

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  8. Transcriptomic Profiles ofAnimals : an open access journal from MDPI · 2024
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  15. The evolution of vimentin and desmin inFrontiers in physiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Eva PampouilleBOA, INRA, Université de Tours, 37380, Nouzilly, France.
Christelle Hennequet-AntierBOA, INRA, Université de Tours, 37380, Nouzilly, France.
Christophe PraudBOA, INRA, Université de Tours, 37380, Nouzilly, France.
Amélie JuanchichBOA, INRA, Université de Tours, 37380, Nouzilly, France.
Aurélien BrionneBOA, INRA, Université de Tours, 37380, Nouzilly, France.
Estelle GodetBOA, INRA, Université de Tours, 37380, Nouzilly, France.
Thierry BordeauBOA, INRA, Université de Tours, 37380, Nouzilly, France.
Fréderic FagnoulHubbard SAS, Mauguérand, 22800, Le Foeil - Quintin, France.
Elisabeth Le Bihan-DuvalBOA, INRA, Université de Tours, 37380, Nouzilly, France.
Cécile BerriBOA, INRA, Université de Tours, 37380, Nouzilly, France. cecile.berri@inra.fr.
Université de Tours · FRBiologie des Oiseaux et Aviculture · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The broiler industry is facing an increasing prevalence of breast myopathies, such as white striping (WS) and wooden breast (WB), and the precise aetiology of these occurrences remains poorly understood. To progress our understanding of the structural changes and molecular pathways involved in these myopathies, a transcriptomic analysis was performed using an 8 × 60 K Agilent chicken microarray and histological study. The study used pectoralis major muscles from three groups: slow-growing animals (n = 8), fast-growing animals visually free from defects (n = 8), or severely affected by both WS and WB (n = 8). In addition, a weighted correlation network analysis was performed to investigate the relationship between modules of co-expressed genes and histological traits. Functional analysis suggested that selection for fast growing and breast meat yield has progressively led to conditions favouring metabolic shifts towards alternative catabolic pathways to produce energy, leading to an adaptive response to oxidative stress and the first signs of inflammatory, regeneration and fibrosis processes. All these processes are intensified in muscles affected by severe myopathies, in which new mechanisms related to cellular defences and remodelling seem also activated. Furthermore, our study opens new perspectives for myopathy diagnosis by highlighting fine histological phenotypes and genes whose expression was strongly correlated with defects.

Indexed as

Gene Regulatory NetworksAnimal HusbandryAnimalsBiomarkersBody CompositionChickensGene Expression ProfilingGenetic MarkersMeatMuscular DiseasesPectoralis MusclesPoultry DiseasesQuantitative Trait LociSeverity of Illness IndexBiomarkersGenetic Markers

Identifiers

PMID31624339
PMCPMC6797748
OpenAlexW2981003921

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.