Evidence map›Paper›PMID 31624296›Full record

ArticleScientific reports2019

Fucosylated inhibitors of recently identified bangle lectin from Photorhabdus asymbiotica.

Gita Paulíková, Josef Houser, Martina Kašáková, Beáta Oroszová, Benedetta Bertolotti, Kamil Parkan, Jitka Moravcová, Michaela Wimmerová

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Gita PaulíkováCentral European Institute of Technology, Masaryk University, Brno, Czech Republic.ORCID http://orcid.org/0000-0001-8692-8392
Josef HouserCentral European Institute of Technology, Masaryk University, Brno, Czech Republic.ORCID http://orcid.org/0000-0003-4504-3891
Martina KašákováDepartment of Chemistry of Natural Compounds, University of Chemistry and Technology, Prague, Czech Republic.
Beáta OroszováDepartment of Chemistry of Natural Compounds, University of Chemistry and Technology, Prague, Czech Republic.
Benedetta BertolottiDepartment of Chemistry of Natural Compounds, University of Chemistry and Technology, Prague, Czech Republic.ORCID http://orcid.org/0000-0001-6210-7004
Kamil ParkanDepartment of Chemistry of Natural Compounds, University of Chemistry and Technology, Prague, Czech Republic.ORCID http://orcid.org/0000-0001-7585-6004
Jitka MoravcováDepartment of Chemistry of Natural Compounds, University of Chemistry and Technology, Prague, Czech Republic.
Michaela WimmerováCentral European Institute of Technology, Masaryk University, Brno, Czech Republic. michaw@chemi.muni.cz.ORCID http://orcid.org/0000-0002-7108-4198
University of Chemistry and Technology, Prague · CZCentral European Institute of Technology · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A recently described bangle lectin (PHL) from the bacterium Photorhabdus asymbiotica was identified as a mainly fucose-binding protein that could play an important role in the host-pathogen interaction and in the modulation of host immune response. Structural studies showed that PHL is a homo-dimer that contains up to seven L-fucose-specific binding sites per monomer. For these reasons, potential ligands of the PHL lectin: α-L-fucopyranosyl-containing mono-, di-, tetra-, hexa- and dodecavalent ligands were tested. Two types of polyvalent structures were investigated - calix[4]arenes and dendrimers. The shared feature of all these structures was a C-glycosidic bond instead of the more common but physiologically unstable O-glycosidic bond. The inhibition potential of the tested structures was assessed using different techniques - hemagglutination, surface plasmon resonance, isothermal titration calorimetry, and cell cross-linking. All the ligands proved to be better than free L-fucose. The most active hexavalent dendrimer exhibited affinity three orders of magnitude higher than that of standard L-fucose. To determine the binding mode of some ligands, crystal complex PHL/fucosides 2 - 4 were prepared and studied using X-ray crystallography. The electron density in complexes proved the presence of the compounds in 6 out of 7 fucose-binding sites.

Indexed as

Anti-Bacterial AgentsBacterial InfectionsBacterial ProteinsBinding SitesCrystallography, X-RayDendrimersErythrocytesFucoseHemagglutinationHost-Pathogen InteractionsHumansLectinsLigandsModels, MolecularPhotorhabdusRecombinant ProteinsAnti-Bacterial AgentsBacterial ProteinsDendrimersFucosefucose-binding lectinLectinsLigandsRecombinant Proteins

Identifiers

PMID31624296
PMCPMC6797808
OpenAlexW2980668929

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.