Evidence map›Paper›PMID 31624127›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Whole-exome sequencing of cervical carcinomas identifies activating ERBB2 and PIK3CA mutations as targets for combination therapy.

Luca Zammataro, Salvatore Lopez, Stefania Bellone, Francesca Pettinella, Elena Bonazzoli, Emanuele Perrone, Siming Zhao, Gulden Menderes, Gary Altwerger, Chanhee Han and 35 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 2 pooled it
11.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 2 syntheses or guidelines pooled it, 93 citations in OpenAlex.

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  14. Integrated mutational landscape analysis of poorly differentiated high-grade neuroendocrine carcinoma of the uterine cervix.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

45 authors at 11 institutions in 3 countries.

Luca ZammataroDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Salvatore LopezDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Stefania BelloneDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Francesca PettinellaDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Elena BonazzoliDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Emanuele PerroneDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Siming ZhaoDepartment of Human Genetics, The University of Chicago, Chicago, IL 60637.
Gulden MenderesDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Gary AltwergerDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Chanhee HanDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Burak ZeybekDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Anna BianchiDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Aranzazu ManzanoDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Paola ManaraDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Emiliano CoccoHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065.
Natalia BuzaDepartment of Pathology, Yale University School of Medicine, New Haven, CT 06520.
Pei HuiDepartment of Pathology, Yale University School of Medicine, New Haven, CT 06520.
Serena WongDepartment of Pathology, Yale University School of Medicine, New Haven, CT 06520.
Antonella Ravaggi"Angelo Nocivelli" Institute of Molecular Medicine, Department of Obstetrics, & Gynecology, University of Brescia, 25100 Brescia, Italy.ORCID 0000-0003-4661-9979
Eliana Bignotti"Angelo Nocivelli" Institute of Molecular Medicine, Department of Obstetrics, & Gynecology, University of Brescia, 25100 Brescia, Italy.ORCID 0000-0001-6380-6181
Chiara Romani"Angelo Nocivelli" Institute of Molecular Medicine, Department of Obstetrics, & Gynecology, University of Brescia, 25100 Brescia, Italy.
Paola Todeschini"Angelo Nocivelli" Institute of Molecular Medicine, Department of Obstetrics, & Gynecology, University of Brescia, 25100 Brescia, Italy.
Laura Zanotti"Angelo Nocivelli" Institute of Molecular Medicine, Department of Obstetrics, & Gynecology, University of Brescia, 25100 Brescia, Italy.
Franco Odicino"Angelo Nocivelli" Institute of Molecular Medicine, Department of Obstetrics, & Gynecology, University of Brescia, 25100 Brescia, Italy.
Sergio Pecorelli"Angelo Nocivelli" Institute of Molecular Medicine, Department of Obstetrics, & Gynecology, University of Brescia, 25100 Brescia, Italy.
Carla DonzelliDepartment of Pathology, University of Brescia, 25100 Brescia, Italy.
Laura ArdighieriDepartment of Pathology, University of Brescia, 25100 Brescia, Italy.
Roberto AngioliDepartment of Gynecology and Obstetrics, Università Campus Bio-Medico di Roma, 00128 Rome, Italy.
Francesco RaspagliesiDepartment of Gynecology Oncology, Fondazione Istituto di Ricovero e Cura a Carattere Scientifico Istituto Nazionale dei Tumori di Milano, 20133 Milan, Italy.
Giovanni ScambiaInstitute of Obstetrics and Gynecology, Università Cattolica del Sacro Cuore, 00168 Rome, Italy.
Jungmin ChoiDepartment of Genetics, The Rockefeller University, New York, NY 10065.
Weilai DongDepartment of Genetics, The Rockefeller University, New York, NY 10065.
Kaya BilguvarDepartment of Genetics, Yale University School of Medicine, New Haven, CT 06510.
Ludmil B AlexandrovDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0003-3596-4515
Dan-Arin SilasiDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Gloria S HuangDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Elena RatnerDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Masoud AzodiDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Peter E SchwartzDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Valentina PirazzoliYale Cancer Center, Yale University School of Medicine, New Haven, CT 06510.
Amy L StieglerDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT 06520.
Titus J BoggonDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT 06520.
Richard P LiftonDepartment of Genetics, The Rockefeller University, New York, NY 10065.
Joseph SchlessingerDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT 06520 Joseph.Schlessinger@Yale.edu.
Alessandro D SantinDepartment of Obstetrics, Gynecology & Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06510.
Yale University · USUniversity of Brescia · ITRockefeller University · USUniversità Cattolica del Sacro Cuore · ITFondazione IRCCS Istituto Nazionale dei Tumori · ITKorea University · KRMemorial Sloan Kettering Cancer Center · USUniversità Campus Bio-Medico · ITUniversity of California San Diego · USUniversity of Chicago · USYale Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI MEGAN C KING · 1985 to 2026
$85.0M
Translational Research in Oncology Training ProgramT32CA160001 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI SAWYERS, CHARLES L. · 2011 to 2020
$2.0M
Integrated genomic analysis of racial disparities in endometrial cancerU01CA176067 · NCI · YALE UNIVERSITY · PI SANTIN, ALESSANDRO D · 2014 to 2018
$1.7M
CPE Peptide-Based Nanoparticles for the Diagnosis and Therapy of Chemotherapy ResR01CA154460 · NCI · YALE UNIVERSITY · PI SANTIN, ALESSANDRO D · 2011 to 2015
$1.7M
NCATS NIH HHS UL1 TR001863NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA016359NCI NIH HHS R01 CA154460NCI NIH HHS T32 CA160001NCI NIH HHS U01 CA176067
6 · The paper itself

Abstract

The prognosis of advanced/recurrent cervical cancer patients remains poor. We analyzed 54 fresh-frozen and 15 primary cervical cancer cell lines, along with matched-normal DNA, by whole-exome sequencing (WES), most of which harboring Human-Papillomavirus-type-16/18. We found recurrent somatic missense mutations in 22 genes (including PIK3CA, ERBB2, and GNAS) and a widespread APOBEC cytidine deaminase mutagenesis pattern (TCW motif) in both adenocarcinoma (ACC) and squamous cell carcinomas (SCCs). Somatic copy number variants (CNVs) identified 12 copy number gains and 40 losses, occurring more often than expected by chance, with the most frequent events in pathways similar to those found from analysis of single nucleotide variants (SNVs), including the ERBB2/PI3K/AKT/mTOR, apoptosis, chromatin remodeling, and cell cycle. To validate specific SNVs as targets, we took advantage of primary cervical tumor cell lines and xenografts to preclinically evaluate the activity of pan-HER (afatinib and neratinib) and PIK3CA (copanlisib) inhibitors, alone and in combination, against tumors harboring alterations in the ERBB2/PI3K/AKT/mTOR pathway (71%). Tumors harboring

Indexed as

Exome SequencingMutationAnimalsCell Line, TumorClass I Phosphatidylinositol 3-KinasesCombined Modality TherapyDNA Copy Number VariationsErb-b2 Receptor Tyrosine KinasesFemaleHeterograftsHumansPolymorphism, Single NucleotideUterine Cervical NeoplasmsClass I Phosphatidylinositol 3-KinasesERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesPIK3CA protein, humancervical cancercopanlisibHER2/neuneratinibPIK3CA

Identifiers

PMID31624127
PMCPMC6842590
OpenAlexW2981195015

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.