Evidence map›Paper›PMID 31623513›Full record

ArticleJournal of dental research2019

Transcriptomic and Single-Cell Analysis of the Murine Parotid Gland.

A Oyelakin, E A C Song, S Min, J E Bard, J V Kann, E Horeth, K Smalley, J M Kramer, S Sinha, R A Romano

Abstract read
In one paragraph

Article in Journal of dental research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Craniofacial developmental biology in the single-cell era.Development (Cambridge, England) · 2023
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

A OyelakinDepartment of Oral Biology, School of Dental Medicine, State University of New York at Buffalo, Buffalo, NY, USA.
E A C SongDepartment of Oral Biology, School of Dental Medicine, State University of New York at Buffalo, Buffalo, NY, USA.
S MinDepartment of Oral Biology, School of Dental Medicine, State University of New York at Buffalo, Buffalo, NY, USA.
J E BardGenomics and Bioinformatics Core, State University of New York at Buffalo, Buffalo, NY, USA.
J V KannGenomics and Bioinformatics Core, State University of New York at Buffalo, Buffalo, NY, USA.
E HorethDepartment of Oral Biology, School of Dental Medicine, State University of New York at Buffalo, Buffalo, NY, USA.
K SmalleyDepartment of Biochemistry, Jacobs School of Medicine and Biomedical Sciences, State University of New York at Buffalo, Buffalo, NY, USA.
J M KramerDepartment of Oral Biology, School of Dental Medicine, State University of New York at Buffalo, Buffalo, NY, USA.
S SinhaDepartment of Biochemistry, Jacobs School of Medicine and Biomedical Sciences, State University of New York at Buffalo, Buffalo, NY, USA.
R A RomanoDepartment of Oral Biology, School of Dental Medicine, State University of New York at Buffalo, Buffalo, NY, USA.

Funding

Enabling Access to Cutting-Edge Biomedical and Behavioral ScienceR25GM095459 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI DUBOCOVICH, MARGARITA L · 2012 to 2021
$4.4M
Advanced Training in Oral BiologyT32DE023526 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI Stefan Hans-Klaus Ruhl · 2013 to 2026
$3.7M
Regulatory mechanisms that dictate stem and differentiated cell populations of the salivary glandR01DE027660 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI Rose-Anne Romano, SATRAJIT SINHA · 2019 to 2026
$3.2M
Elucidating the role of p63 and transcriptional control mechanisms in progenitor cells of the salivary glandR03DE025889 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI ROMANO, ROSE-ANNE · 2017 to 2018
$238k
Molecular analysis of the oncogenic role of p63 in the development and progression of oral squamous cell carcinomasF31DE028480 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI OYELAKIN, AKINSOLA AYOMIKUN · 2019 to 2020
$53k
NIDCR NIH HHS F31 DE028480NIDCR NIH HHS R01 DE027660NIDCR NIH HHS R03 DE025889NIDCR NIH HHS T32 DE023526NIGMS NIH HHS R25 GM095459
6 · The paper itself

Abstract

The salivary complex of mammals consists of 3 major pairs of glands: the parotid, submandibular, and sublingual glands. While the 3 glands share similar functional properties, such as saliva secretion, their differences are largely based on the types of secretions they produce. While recent studies have begun to shed light on the underlying molecular differences among the glands, few have examined the global transcriptional repertoire over various stages of gland maturation. To better elucidate the molecular nature of the parotid gland, we have performed RNA sequencing to generate comprehensive and global gene expression profiles of this gland at different stages of maturation. Our transcriptomic characterization and hierarchical clustering analysis with adult organ RNA sequencing data sets has identified a number of molecular players and pathways that are relevant for parotid gland biology. Moreover, our detailed analysis has revealed a unique parotid gland-specific gene signature that may represent important players that could impart parotid gland-specific biological properties. To complement our transcriptomic studies, we have performed single-cell RNA sequencing to map the transcriptomes of parotid epithelial cells. Interrogation of the single-cell transcriptomes revealed the degree of molecular and cellular heterogeneity of the various epithelial cell types within the parotid gland. Moreover, we uncovered a mixed-lineage population of cells that may reflect molecular priming of differentiation potentials. Overall our comprehensive studies provide a powerful tool for the discovery of novel molecular players important in parotid gland biology.

Indexed as

Single-Cell AnalysisTranscriptomeAnimalsMiceParotid Glandbioinformaticsgene expressiongenomicsRNA sequencingsalivary glandssingle-cell RNA sequencing

Identifiers

PMID31623513
PMCPMC6873284

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.