Evidence map›Paper›PMID 31622514›Full record

ArticleProteins2020

RMSD analysis of structures of the bacterial protein FimH identifies five conformations of its lectin domain.

Pearl Magala, Rachel E Klevit, Wendy E Thomas, Evgeni V Sokurenko, Ronald E Stenkamp

Open access · greenAbstract read
In one paragraph

Article in Proteins, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
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  9. Conformational ensembles inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Article
  11. Article
  12. Conserved FimH mutations in the globalComputational and structural biotechnology journal · 2022
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 2 countries.

Pearl MagalaDepartment of Biochemistry, University of Washington, Seattle, WA.
Rachel E KlevitDepartment of Biochemistry, University of Washington, Seattle, WA.
Wendy E ThomasDepartment of Bioengineering, University of Washington, Seattle, WA.
Evgeni V SokurenkoDepartment of Microbiology, University of Washington, Seattle, WA.
Ronald E StenkampDepartment of Biochemistry, University of Washington, Seattle, WA.ORCID 0000-0003-4151-1336
University of Washington · US

Funding

Conformational dynamics of adhesive bondsR01AI119675 · NIAID · UNIVERSITY OF WASHINGTON · PI SOKURENKO, EVGENI VENIAMINOVIC, THOMAS, WENDY E · 2016 to 2020
$2.9M
NIAID NIH HHS 5R01AI119675-03NIAID NIH HHS R01 AI119675
6 · The paper itself

Abstract

FimH is a bacterial adhesin protein located at the tip of Escherichia coli fimbria that functions to adhere bacteria to host cells. Thus, FimH is a critical factor in bacterial infections such as urinary tract infections and is of interest in drug development. It is also involved in vaccine development and as a model for understanding shear-enhanced catch bond cell adhesion. To date, over 60 structures have been deposited in the Protein Data Bank showing interactions between FimH and mannose ligands, potential inhibitors, and other fimbrial proteins. In addition to providing insights about ligand recognition and fimbrial assembly, these structures provide insights into conformational changes in the two domains of FimH that are critical for its function. To gain further insights into these structural changes, we have superposed FimH's mannose binding lectin domain in all these structures and categorized the structures into five groups of lectin domain conformers using RMSD as a metric. Many structures also include the pilin domain, which anchors FimH to the fimbriae and regulates the conformation and function of the lectin domain. For these structures, we have also compared the relative orientations of the two domains. These structural analyses enhance our understanding of the conformational changes associated with FimH ligand binding and domain-domain interactions, including its catch bond behavior through allosteric action of force in bacterial adhesion.

Indexed as

Adhesins, Escherichia coliAllosteric RegulationBacterial AdhesionBinding SitesCloning, MolecularCrystallography, X-RayEscherichia coliFimbriae, BacterialFimbriae ProteinsGene ExpressionGenetic VectorsLectinsLigandsMannoseModels, MolecularProtein BindingAdhesins, Escherichia coliFimbriae ProteinsfimH protein, E coliLectinsLigandsMannoseRecombinant Proteinsallosterybacterial adhesioncatch bondsconformationsFimH

Identifiers

PMID31622514
PMCPMC7058522
OpenAlexW2980682354

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.