Evidence map›Paper›PMID 31622418›Full record

ArticlePloS one2019

Effects of MCHM on yeast metabolism.

Amaury Pupo, Kang Mo Ku, Jennifer E G Gallagher

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Amaury PupoDepartment of Biology, West Virginia University, Morgantown, West Virginia, United States of America.ORCID 0000-0001-9162-9952
Kang Mo KuDivision of Plant and Soil Sciences, West Virginia University, Morgantown, West Virginia, United States of America.
Jennifer E G GallagherDepartment of Biology, West Virginia University, Morgantown, West Virginia, United States of America.ORCID 0000-0002-6163-3181
West Virginia University · USChonnam National University · KR

Funding

A Systems Approach to Understanding Effects of MCHM on Cellular MetabolismR15ES026811 · NIEHS · WEST VIRGINIA UNIVERSITY · PI GALLAGHER, JENNIFER · 2016 to 2016
$448k
NIEHS NIH HHS R15 ES026811
6 · The paper itself

Abstract

On January 2014 approximately 10,000 gallons of crude 4-Methylcyclohexanemethanol (MCHM) and propylene glycol phenol ether (PPH) were accidentally released into the Elk River, West Virginia, contaminating the tap water of around 300,000 residents. Crude MCHM is an industrial chemical used as flotation reagent to clean coal. At the time of the spill, MCHM's toxicological data were limited, an issue that has been addressed by different studies focused on understanding the immediate and long-term effects of MCHM on human health and the environment. Using S. cerevisiae as a model organism we study the effect of acute exposure to crude MCHM on metabolism. Yeasts were treated with MCHM 550 ppm in YPD for 30 minutes. Polar and lipid metabolites were extracted from cells by a chloroform-methanol-water mixture. The extracts were then analyzed by direct injection ESI-MS and by GC-MS. The metabolomics analysis was complemented with flux balance analysis simulations done with genome-scale metabolic network models (GSMNM) of MCHM treated vs non-treated control. We integrated the effect of MCHM on yeast gene expression from RNA-Seq data within these GSMNM. A total of 215 and 73 metabolites were identified by the ESI-MS and GC-MS procedures, respectively. From these 26 and 23 relevant metabolites were selected from ESI-MS and GC-MS respectively, for 49 unique compounds. MCHM induced amino acid accumulation, via its effects on amino acid metabolism, as well as a potential impairment of ribosome biogenesis. MCHM affects phospholipid biosynthesis, with a potential impact on the biophysical properties of yeast cellular membranes. The FBA simulations were able to reproduce the deleterious effect of MCHM on cellular growth and suggest that the effect of MCHM on ubiquinol:ferricytochrome c reductase reaction, caused by the under-expression of CYT1 gene, could be the driven force behind the observed effect on yeast metabolism and growth.

Indexed as

CyclohexanesFungal ProteinsGas Chromatography-Mass SpectrometryGene Expression ProfilingGene Expression Regulation, FungalMetabolic Flux AnalysisMetabolomeMetabolomicsModels, BiologicalSaccharomyces cerevisiaeSequence Analysis, RNAWater Pollutants, ChemicalWest Virginia4-methylcyclohexanemethanolCyclohexanesFungal ProteinsWater Pollutants, Chemical

Identifiers

PMID31622418
PMCPMC6797124
OpenAlexW2980674509

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.