Evidence map›Paper›PMID 31622379›Full record

ArticlePloS one2019

Genetic analysis of hsCRP in American Indians: The Strong Heart Family Study.

Lyle G Best, Poojitha Balakrishnan, Shelley A Cole, Karin Haack, Jonathan M Kocarnik, Nathan Pankratz, Matthew Z Anderson, Nora Franceschini, Barbara V Howard, Elisa T Lee and 5 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Observational
  2. Article
  3. Article
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  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 10 institutions in 1 country.

Lyle G BestMissouri Breaks Industries Research Inc. Eagle Butte, SD, United States of America.ORCID 0000-0002-7813-0724
Poojitha BalakrishnanSchool of Medicine, University of Alabama at Birmingham, Birmingham, AL, United States of America.
Shelley A ColeTexas Biomedical Research Institute, San Antonio, TX, United States of America.
Karin HaackTexas Biomedical Research Institute, San Antonio, TX, United States of America.
Jonathan M KocarnikPublic Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, United States of America.
Nathan PankratzDepartment of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, MN, United States of America.
Matthew Z AndersonDepartment of Microbiology, Ohio State University, Columbus, OH, United States of America.ORCID 0000-0003-1683-2170
Nora FranceschiniDepartment of Epidemiology, University of North Carolina, Chapel Hill, NC, United States of America.
Barbara V HowardMedStar Health Research Institute, Hyattsville, MD, United States of America.
Elisa T LeeCollege of Public Health, University of Oklahoma Health Sciences Center, Oklahoma City, OK, United States of America.
Kari E NorthUniversity of North Carolina, Gillings School of Global Public Health, Chapel Hill, NC, United States of America.
Jason G UmansMedStar Health Research Institute, Hyattsville, MD, United States of America.ORCID 0000-0002-2746-3350
Joseph M YrachetaMissouri Breaks Industries Research Inc. Eagle Butte, SD, United States of America.
Ana Navas-AcienDepartment of Environmental Health Sciences, Columbia University, New York, NY, United States of America.
V Saroja VorugantiDepartment of Nutrition and Nutrition Research Institute, University of North Carolina, Chapel Hill, North Carolina, United States of America.
University of North Carolina at Chapel Hill · USGeorgetown-Howard Universities Center for Clinical and Translational Science · USMissouri Breaks Industries Research (United States) · USTexas Biomedical Research Institute · USColumbia University · USFred Hutch Cancer Center · USThe Ohio State University · USUniversity of Alabama at Birmingham · USUniversity of Minnesota · USUniversity of Oklahoma Health Sciences Center · US

Funding

Maternal Morbidity and Mortality: Risk Factors, Early Detection and Personalized InterventionUL1TR001409 · NCATS · GEORGETOWN UNIVERSITY · PI GONDRE-LEWIS, MARJORIE C, MELLMAN, THOMAS A · 2015 to 2024
$37.8M
UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Hazel B Nichols · 2001 to 2026
$36.3M
UNIV OF NORTH CAROLINA CLINICAL NUTRITION RESEARCH UNITP30DK056350 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Venkata Saroja Voruganti · 1999 to 2026
$31.6M
CVD in American Indians Study and Data Management Center and OK Field CenterR01HL109284 · NHLBI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI STONER, JULIE A · 2013 to 2018
$4.6M
CVD in American Indians Biomarker lab and Arizona Field CenterR01HL109319 · NHLBI · MEDSTAR HEALTH RESEARCH INSTITUTE · PI UMANS, JASON G · 2013 to 2017
$3.6M
CVD in American Indians Genetics CenterR01HL109301 · NHLBI · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI COLE, SHELLEY A · 2013 to 2018
$3.2M
Arsenic Exposure, Genetic Determinants and Diabetes Risk in a Family StudyR01ES021367 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI NAVAS-ACIEN, ANA, VAIDYA, DHANANJAY MADHUKAR · 2012 to 2015
$2.4M
CVD in American Indians The Dakota Field CenterR01HL109315 · NHLBI · MISSOURI BREAKS RESEARCH, INC. · PI JOLLY, STACEY · 2013 to 2018
$1.9M
Comprehensive SNP Discovery in SLC2A9. A Candidate Gene for Uric Acid NephropathyR01DK092238 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI VORUGANTI, VENKATA SAROJA · 2012 to 2015
$1.3M
NCATS NIH HHS UL1 TR001409NHLBI NIH HHS R01 HL109284NHLBI NIH HHS R01 HL109301NHLBI NIH HHS R01 HL109315NHLBI NIH HHS R01 HL109319NIDDK NIH HHS P30 DK056350NIDDK NIH HHS R01 DK092238NIEHS NIH HHS P30 ES010126NIEHS NIH HHS R01 ES021367
6 · The paper itself

Abstract

backgroundIncreased serum levels of C-reactive protein (CRP), an important component of the innate immune response, are associated with increased risk of cardiovascular disease (CVD). Multiple single nucleotide polymorphisms (SNP) have been identified which are associated with CRP levels, and Mendelian randomization studies have shown a positive association between SNPs increasing CRP expression and risk of colon cancer (but thus far not CVD). The effects of individual genetic variants often interact with the genetic background of a population and hence we sought to resolve the genetic determinants of serum CRP in a number of American Indian populations.

methodsThe Strong Heart Family Study (SHFS) has serum CRP measurements from 2428 tribal members, recruited as large families from three regions of the United States. Microsatellite markers and MetaboChip defined SNP genotypes were incorporated into variance components, decomposition-based linkage and association analyses.

resultsCRP levels exhibited significant heritability (h2 = 0.33 ± 0.05, p<1.3 X 10-20). A locus on chromosome (chr) 6, near marker D6S281 (approximately at 169.6 Mb, GRCh38/hg38) showed suggestive linkage (LOD = 1.9) to CRP levels. No individual SNPs were found associated with CRP levels after Bonferroni adjustment for multiple testing (threshold <7.77 x 10-7), however, we found nominal associations, many of which replicate previous findings at the CRP, HNF1A and 7 other loci. In addition, we report association of 46 SNPs located at 7 novel loci on chromosomes 2, 5, 6(2 loci), 9, 10 and 17, with an average of 15.3 Kb between SNPs and all with p-values less than 7.2 X 10-4.

conclusionIn agreement with evidence from other populations, these data show CRP serum levels are under considerable genetic influence; and include loci, such as near CRP and other genes, that replicate results from other ethnic groups. These findings also suggest possible novel loci on chr 6 and other chromosomes that warrant further investigation.

Indexed as

BiomarkersGenetics, PopulationGenetic VariationAllelesC-Reactive ProteinFemaleGenetic LinkageGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotypeHumansIndians, North AmericanMalePolymorphism, Single NucleotideBiomarkersC-Reactive Protein

Identifiers

PMID31622379
PMCPMC6797125
OpenAlexW2980629729

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.