Evidence map›Paper›PMID 31622355›Full record

ArticlePloS one2019

An integrated epigenome and transcriptome analysis identifies PAX2 as a master regulator of drug resistance in high grade pancreatic ductal adenocarcinoma.

Imlimaong Aier, Rahul Semwal, Aiindrila Dhara, Nirmalya Sen, Pritish Kumar Varadwaj

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Imlimaong AierDepartment of Bioinformatics & Applied Sciences, Indian Institute of Information Technology-Allahabad, Uttar Pradesh, India.
Rahul SemwalDepartment of Information Technology, Indian Institute of Information Technology-Allahabad, Uttar Pradesh, India.
Aiindrila DharaCancer Research Program, Rajiv Gandhi Centre for Biotechnology, Trivandrum, Kerala, India.
Nirmalya SenCancer Research Program, Rajiv Gandhi Centre for Biotechnology, Trivandrum, Kerala, India.
Pritish Kumar VaradwajDepartment of Bioinformatics & Applied Sciences, Indian Institute of Information Technology-Allahabad, Uttar Pradesh, India.ORCID 0000-0001-5706-2411
Indian Institute of Information Technology Allahabad · INRajiv Gandhi Centre for Biotechnology · INUniversity of Kalyani · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pancreatic ductal adenocarcinoma (PDAC) is notoriously difficult to treat due to its aggressive, ever resilient nature. A major drawback lies in its tumor grade; a phenomenon observed across various carcinomas, where highly differentiated and undifferentiated tumor grades, termed as low and high grade respectively, are found in the same tumor. One eminent problem due to such heterogeneity is drug resistance in PDAC. This has been implicated to ABC transporter family of proteins that are upregulated in PDAC patients. However, the regulation of these transporters with respect to tumor grade in PDAC is not well understood. To combat these issues, a study was designed to identify novel genes that might regulate drug resistance phenotype and be used as targets. By integrating epigenome with transcriptome data, several genes were identified based around high grade PDAC. Further analysis indicated oncogenic PAX2 transcription factor as a novel regulator of drug resistance in high grade PDAC cell lines. It was observed that silencing of PAX2 resulted in increased susceptibility of high grade PDAC cells to various chemotherapeutic drugs. Mechanistically, the study showed that PAX2 protein can bind and alter transcriptionally; expression of many ABC transporter genes in high grade PDAC cell lines. Overall, the study indicated that PAX2 significantly upregulated ABC family of genes resulting in drug resistance and poor survival in PDAC.

Indexed as

EpigenomeGene Expression ProfilingTranscriptomeBiomarkers, TumorCarcinoma, Pancreatic DuctalCell Line, TumorCell MovementCell ProliferationDrug Resistance, NeoplasmEpigenesis, GeneticGene Expression Regulation, NeoplasticHumansNeoplasm GradingNeoplasm StagingPancreatic NeoplasmsPAX2 Transcription FactorBiomarkers, TumorPAX2 Transcription Factor

Identifiers

PMID31622355
PMCPMC6797122
OpenAlexW2981317639

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.