Evidence map›Paper›PMID 31620994›Full record

ArticleVirologica Sinica2020

Structural Basis of Glycan Recognition in Globally Predominant Human P[8] Rotavirus.

Xiaoman Sun, Lei Dang, Dandi Li, Jianxun Qi, Mengxuan Wang, Wengang Chai, Qing Zhang, Hong Wang, Ruixia Bai, Ming Tan and 1 more

Open access · greenAbstract read
In one paragraph

Article in Virologica Sinica, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Structural basis of P[II] rotavirus evolution and host ranges under selection of histo-blood group antigens.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. Article
  10. Article
  11. Structural Basis of Glycan Recognition of Rotavirus.Frontiers in molecular biosciences · 2021
    Review
  12. Viruses · 2020
    Article
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Xiaoman SunNational Health Commission Key Laboratory for Medical Virology and Viral Diseases, Beijing, 102206, China.
Lei DangNational Health Commission Key Laboratory for Medical Virology and Viral Diseases, Beijing, 102206, China.
Dandi LiNational Health Commission Key Laboratory for Medical Virology and Viral Diseases, Beijing, 102206, China.
Jianxun QiInstitute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
Mengxuan WangNational Health Commission Key Laboratory for Medical Virology and Viral Diseases, Beijing, 102206, China.
Wengang ChaiGlycosciences Laboratory, Department of Medicine, Imperial College London, London, UK.
Qing ZhangNational Health Commission Key Laboratory for Medical Virology and Viral Diseases, Beijing, 102206, China.
Hong WangNational Health Commission Key Laboratory for Medical Virology and Viral Diseases, Beijing, 102206, China.
Ruixia BaiInner Mongolia Medical University, Huhehaote, 010059, China.
Ming TanDivision of Infectious Diseases, University of Cincinnati College of Medicine, Cincinnati, OH, USA.
Zhaojun DuanNational Health Commission Key Laboratory for Medical Virology and Viral Diseases, Beijing, 102206, China. zhaojund@126.com.ORCID http://orcid.org/0000-0003-3090-4150
Chinese Center For Disease Control and Prevention · CNChinese Academy of Sciences · CNImperial College London · GBInner Mongolia Medical University · CNUniversity of Cincinnati Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rotavirus (RV) causes acute gastroenteritis in infants and children worldwide. Recent studies showed that glycans such as histo-blood group antigens (HBGAs) function as cell attachment factors affecting RV host susceptibility and prevalence. P[8] is the predominant RV genotype in humans, but the structural basis of how P[8] RVs interact with glycan ligands remains elusive. In this study, we characterized the interactions between P[8] VP8*s and glycans which showed that VP8*, the RV glycan binding domain, recognized both mucin core 2 and H type 1 antigens according to the ELISA-based oligosaccharide binding assays. Importantly, we determined the structural basis of P[8] RV-glycans interaction from the crystal structures of a Rotateq P[8] VP8* in complex with core 2 and H type 1 glycans at 1.8 Å and 2.3 Å, respectively, revealing a common binding pocket and similar binding mode. Structural and sequence analysis demonstrated that the glycan binding site is conserved among RVs in the P[II] genogroup, while genotype-specific amino acid variations determined different glycan binding preference. Our data elucidated the detailed structural basis of the interactions between human P[8] RVs and different host glycan factors, shedding light on RV infection, epidemiology, and development of anti-viral agents.

Indexed as

Host Microbial InteractionsVirus AttachmentAnimalsBinding SitesChlorocebus aethiopsCrystallizationEpithelial CellsGenotypeHost SpecificityHumansKidneyPolysaccharidesRotavirusViral ProteinsPolysaccharidesViral ProteinsGlycan binding specificityLacto-N-fucopentaose 1 (LNFP1)Mucin core 2P[8]Rotavirus (RV)VP8* structure

Identifiers

PMID31620994
PMCPMC7198667
OpenAlexW2979826780

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.