Evidence map›Paper›PMID 31620696›Full record

ArticleTurkish archives of otorhinolaryngology2019

First-Line Molecular Genetic Evaluation of Autosomal Recessive Non-Syndromic Hearing Loss.

Berk Özyılmaz, Gül Caner Mercan, Özgür Kırbıyık, Taha Reşid Özdemir, Samira Özkara, Özge Özer Kaya, Yaşar Bekir Kutbay, Kadri Murat Erdoğan, Merve Saka Güvenç, Altuğ Koç

Open access · diamondAbstract read
In one paragraph

Article in Turkish archives of otorhinolaryngology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Berk ÖzyılmazGenetic Diagnosis Center, University of Health Sciences, Tepecik Training and Research Hospital, İzmir, Turkey.ORCID 0000-0003-2654-3698
Gül Caner MercanDepartment of Otolaryngology, University of Health Sciences, Tepecik Training and Research Hospital, İzmir, Turkey.ORCID 0000-0002-0968-9305
Özgür KırbıyıkGenetic Diagnosis Center, University of Health Sciences, Tepecik Training and Research Hospital, İzmir, Turkey.ORCID 0000-0003-1333-2007
Taha Reşid ÖzdemirGenetic Diagnosis Center, University of Health Sciences, Tepecik Training and Research Hospital, İzmir, Turkey.ORCID 0000-0003-4870-6945
Samira ÖzkaraDepartment of Otolaryngology, University of Health Sciences, Tepecik Training and Research Hospital, İzmir, Turkey.ORCID 0000-0003-2257-2969
Özge Özer KayaGenetic Diagnosis Center, University of Health Sciences, Tepecik Training and Research Hospital, İzmir, Turkey.ORCID 0000-0001-6731-2461
Yaşar Bekir KutbayGenetic Diagnosis Center, University of Health Sciences, Tepecik Training and Research Hospital, İzmir, Turkey.ORCID 0000-0002-9006-5072
Kadri Murat ErdoğanGenetic Diagnosis Center, University of Health Sciences, Tepecik Training and Research Hospital, İzmir, Turkey.ORCID 0000-0003-0097-1424
Merve Saka GüvençGenetic Diagnosis Center, University of Health Sciences, Tepecik Training and Research Hospital, İzmir, Turkey.ORCID 0000-0001-8842-0381
Altuğ KoçGenetic Diagnosis Center, University of Health Sciences, Tepecik Training and Research Hospital, İzmir, Turkey.ORCID 0000-0002-8366-6806
Izmir University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveThe aim of this study is to investigate the efficiency of a first-line molecular genetic evaluation approach, in children with deafness.

methodsPatients who were found to have sensorineural hearing loss by age-appropriate audiological tests were selected for the molecular genetic evaluation. The molecular genetic evaluation was carried out with GJB2 gene sequence analysis and mtDNA m.1555A>G mutation Restriction Fragment Length Polymorphism (RFLP) analysis. Additionally, in a small group of patients, hearing loss Multiplex Ligation-dependent Probe Amplification (MLPA) analysis was done out to identify the possible role of copy number changes.

resultsIn this Turkish cohort, which included 104 index patients and 78 relatives, 33 (31.7%) had Pathogenic/Likely Pathogenic variants. One or more GJB2 sequence variants were identified in 46 (44.1%) of the 104 index patients. The homozygous c.35delG mutation by itself explained the etiology in 24% of our ARSNHL group. In one (5%) of the 20 patients of MLPA group, a hemizygous deletion in POU3F4 gene was detected.

conclusionIn our Turkish cohort, we applied a first-line molecular genetic evaluation approach using GJB2 gene sequence analysis and mtDNA m.1555A>G RFLP analysis. This approach revealed the genetic etiology of 44.1% of our index patients. Additionaly, the results of hearing loss MLPA analysis revealed the limited role of copy number changes in this patient group. Furthermore, with a detailed genotype-phenotype association workup, 2 rare cases of Deafness with Palmoplantar Hyperkeratosis and Keratitis-Ichthyosis-Deafness syndrome were reported.

Indexed as

DeafnessgeneticsGJB2hearing loss

Identifiers

PMID31620696
PMCPMC6779105
OpenAlexW2977723023

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.